PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016487314.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 624aa MW: 68913.7 Da PI: 6.2356 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 276.1 | 1.1e-84 | 264 | 623 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 + +++ e + +g++++aq +Larl+++ sp g+p++R a+yf+eAL+ + + ++ ++pp+ ++ + + ++ a+k+fse+sP+++f ++t XP_016487314.1 264 QFFQASELLLAGQFSNAQMILARLNQQLSPIGKPFKRSAFYFKEALQLPFLL--PCTSTSFPPRIPTPFDCVLKMDAYKAFSEISPLIQFMNFTS 356 67888999999************************************99998..7777889****9999************************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dlel 191 Nq Ilea+ ++++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+ ++e L+ fA+ +g++fe +v+ ++++ + l XP_016487314.1 357 NQPILEALGDAKQIHIIDFDIGCGAQWSSFMQELRSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDVGIRFELEVINLDSFDpkTYPL 451 **********************************************************************************9777654115678 PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 ++Lr ++ Ea+a+n+ + + + +++L+++k+lsPkvvv e+ +++++ ++ +++l+al+yy l+ s++a + e +k+E XP_016487314.1 452 SSLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKHHLLHALQYYEILLASIDAA-NLTPEIGKKIE 539 999************99555444..344....456*********************************************555.34778999*** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r ll+++i+n+v + ++ ++ Wr+ + +aGF+p+++s+ a+ qa+++++++++ g++ve+++ slvl+Wk+++L+s+ aWr XP_016487314.1 540 RSLLQPSIENMVLGRLRS----PDRMPPWRNLFASAGFSPIEFSNMAEIQAECVVKRTQVGGFHVEKRQTSLVLCWKQQELLSILAWR 623 *************99988....9999*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.732 | 235 | 603 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.6E-82 | 264 | 623 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MLVTTSHSPS ASASSCSYGG NMAEKSDLGF GDLDNLLPEL AGSDQTLFRC ISGDMEDPSV 60 SLKQLLQGGN ANADLGCGVS VQSSGFEVSA AGSLAHTDNV SFSNSNLLLN ANIEKIGSVI 120 NSDNKQNVNF EHLNVNLLAR NLPPALSFQE QPSEQNSAYV NMLGSLSYDI SQEQPPPKRH 180 NSGTLGSSLS ALLPEVPFFD SSGDLLLRKQ PLGQMRQQVN FLPFHQFQQK PLIVPKLEAA 240 GGGGNGNLIV PRHQQQEQQF IYDQFFQASE LLLAGQFSNA QMILARLNQQ LSPIGKPFKR 300 SAFYFKEALQ LPFLLPCTST SFPPRIPTPF DCVLKMDAYK AFSEISPLIQ FMNFTSNQPI 360 LEALGDAKQI HIIDFDIGCG AQWSSFMQEL RSSNRKATSL KITAFVSPST HHSVEIGIMH 420 ESLTLFANDV GIRFELEVIN LDSFDPKTYP LSSLRSSECE AIAINFPIWS ISSCLFAFPS 480 LLHCMKQLSP KVVVSLERGC ERTELPLKHH LLHALQYYEI LLASIDAANL TPEIGKKIER 540 SLLQPSIENM VLGRLRSPDR MPPWRNLFAS AGFSPIEFSN MAEIQAECVV KRTQVGGFHV 600 EKRQTSLVLC WKQQELLSIL AWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-26 | 249 | 622 | 7 | 378 | Protein SCARECROW |
5b3h_A | 1e-26 | 249 | 622 | 6 | 377 | Protein SCARECROW |
5b3h_D | 1e-26 | 249 | 622 | 6 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016487314.1 | 0.0 | PREDICTED: scarecrow-like protein 6 | ||||
Refseq | XP_018634164.1 | 0.0 | PREDICTED: scarecrow-like protein 6 | ||||
TrEMBL | A0A1S4BEJ2 | 0.0 | A0A1S4BEJ2_TOBAC; scarecrow-like protein 6 | ||||
STRING | XP_009628961.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6986 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 4e-99 | GRAS family protein |