PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016487313.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 714aa MW: 78052.9 Da PI: 6.5069

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016487313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	282	1.7e-86	353	713	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++++++ e + +g++++aq +Larl+++ sp g+p++R+a+yf+eAL+ + + ++ ++pp+ ++ + + ++ a+k+fsevsP+++f ++t XP_016487313.1 353 DQIFQASELLLAGHFSNAQMILARLNQQLSPIGKPFKRAAFYFKEALQLPFLL--PCTSTSFPPRIPTPFDCVLKMDAYKAFSEVSPLIQFMNFT 445 57899999999***********************************99998..77778899999********************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dle 190 NqaIlea+ ++++HiiDfdi+ G+QW +L+q+L s ++++ sl+iT+++sp+++++ e+ ++e L+ fA+ +g++fe +v+ ++++ + XP_016487313.1 446 SNQAILEALGAAKQIHIIDFDIGCGAQWSSLMQELPSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDVGIRFELEVINLDSFDpkTYP 540 *******************************************************************************977765411567 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284 l++Lr ++ Ea+a+n+ + + + +++L+++k+lsPkvvv e+ +++++ ++ +++l+al+yy l+ s+ +a+ + + +k XP_016487313.1 541 LSSLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKHHLLHALQYYEILLASIdAAN--LTPDVGKK 627 8999********99555444..344....456******************************************5555..4778999 PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er l++ +i+n+v + ++ + Wr+ + +aGF+pv++s+ ++ qa++l++++++ g++ve+++ slvl+Wk+r+L+s+ +Wr XP_016487313.1 628 IERSLFQSSIENMVLGRLRS----PDRIPPWRNLFASAGFSPVAFSNLTEIQAECLVKRTQVGGFHVEKRQSSLVLCWKQRELLSALSWR 713 *************99988....999************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.033	325	693	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.0E-84	353	713	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MIVIPQSNNL AVAKGVLGVS SYVPSISSST EAPICNKGLT FTRNESVSVL DTRSPSPSAS 60 SSSCSYGGQH AGNNGVPGAG AGKIDGRKEE LVTELQPFSF GLEPEKFNLG FGDLDNLLPE 120 LAGSDQTIFR WISGDMEDPS VSLKQLLQGG NANADLGGGV SVAGSFACTD NISFSSSDIS 180 LDANIEKIGY AVIDSNNRPN NNFENLNANL LAKSLPPALS FQEQQSEEKP QISCPQIVAN 240 QTQFQNSAYV NLFGSSSYNM NQEQPPPKRH NSGILGSSLG FLLPKVPFFS PSGDLLLRKQ 300 PLGQMQQQVN LLPPHQFQPT PLFVPKLEAA GGGGNGNLVV PRHQQQEQQF IYDQIFQASE 360 LLLAGHFSNA QMILARLNQQ LSPIGKPFKR AAFYFKEALQ LPFLLPCTST SFPPRIPTPF 420 DCVLKMDAYK AFSEVSPLIQ FMNFTSNQAI LEALGAAKQI HIIDFDIGCG AQWSSLMQEL 480 PSSNRKATSL KITAFVSPST HHSVEIGIMH ESLTLFANDV GIRFELEVIN LDSFDPKTYP 540 LSSLRSSECE AIAINFPIWS ISSCLFAFPS LLHCMKQLSP KVVVSLERGC ERTELPLKHH 600 LLHALQYYEI LLASIDAANL TPDVGKKIER SLFQSSIENM VLGRLRSPDR IPPWRNLFAS 660 AGFSPVAFSN LTEIQAECLV KRTQVGGFHV EKRQSSLVLC WKQRELLSAL SWRC

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MIVIPQSNNL AVAKGVLGVS SYVPSISSST EAPICNKGLT FTRNESVSVL DTRSPSPSAS  60
SSSCSYGGQH AGNNGVPGAG AGKIDGRKEE LVTELQPFSF GLEPEKFNLG FGDLDNLLPE  120
LAGSDQTIFR WISGDMEDPS VSLKQLLQGG NANADLGGGV SVAGSFACTD NISFSSSDIS  180
LDANIEKIGY AVIDSNNRPN NNFENLNANL LAKSLPPALS FQEQQSEEKP QISCPQIVAN  240
QTQFQNSAYV NLFGSSSYNM NQEQPPPKRH NSGILGSSLG FLLPKVPFFS PSGDLLLRKQ  300
PLGQMQQQVN LLPPHQFQPT PLFVPKLEAA GGGGNGNLVV PRHQQQEQQF IYDQIFQASE  360
LLLAGHFSNA QMILARLNQQ LSPIGKPFKR AAFYFKEALQ LPFLLPCTST SFPPRIPTPF  420
DCVLKMDAYK AFSEVSPLIQ FMNFTSNQAI LEALGAAKQI HIIDFDIGCG AQWSSLMQEL  480
PSSNRKATSL KITAFVSPST HHSVEIGIMH ESLTLFANDV GIRFELEVIN LDSFDPKTYP  540
LSSLRSSECE AIAINFPIWS ISSCLFAFPS LLHCMKQLSP KVVVSLERGC ERTELPLKHH  600
LLHALQYYEI LLASIDAANL TPDVGKKIER SLFQSSIENM VLGRLRSPDR IPPWRNLFAS  660
AGFSPVAFSN LTEIQAECLV KRTQVGGFHV EKRQSSLVLC WKQRELLSAL SWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-29	374	713	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016487313.1	0.0	PREDICTED: scarecrow-like protein 22
Refseq	XP_018634163.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A1S4BEP9	0.0	A0A1S4BEP9_TOBAC; scarecrow-like protein 22
STRING	XP_009628960.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6986	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	3e-99	GRAS family protein