PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487233.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 300aa    MW: 34356.3 Da    PI: 5.6528
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487233.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.9e-1887140356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  XP_016487233.1  87 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 140
                     456899***********************************************9 PP
2HD-ZIP_I/II130.66.2e-4286178193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+++a+k+en++L++++++L++e+++
  XP_016487233.1  86 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKRQFEAIKAENDALQSQNQKLHAEVMA 178
                     69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.17E-1979144IPR009057Homeodomain-like
PROSITE profilePS5007117.32982142IPR001356Homeobox domain
SMARTSM003891.8E-1785146IPR001356Homeobox domain
CDDcd000862.28E-1587143No hitNo description
PfamPF000463.1E-1587140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-1989149IPR009057Homeodomain-like
PRINTSPR000311.2E-5113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5122138IPR000047Helix-turn-helix motif
PfamPF021839.4E-16142182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTCTNEMDFF PANFMLQTSH EDEHQPSTSL TPILPSCSPQ DFHGIASFLG KRSMSFSGME  60
AINNNNCEEN HNGEEDLSDD GSQAGEKKRR LNMEQVKTLE KNFELGNKLE PERKMQLARA  120
LGLQPRQIAI WFQNRRARWK TKQLEKDYEI LKRQFEAIKA ENDALQSQNQ KLHAEVMALK  180
NRDQPTESIN LNKETEGSCS NRSENSSEIK LDISRTPAID SPLSTHHPIT SRPFFPPSIR  240
PNNNGVAQLF NMNPNTISRP DLKLMDQNST VKEESSLSNM FCGIDDQTAF WPWLEQQHFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0115561e-150AF011556.1 Lycopersicon esculentum jasmonic acid 1 (LEJA1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763971.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13
RefseqXP_016487233.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC031e-128ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A1S4BEG90.0A0A1S4BEG9_TOBAC; homeobox-leucine zipper protein ATHB-13-like
TrEMBLA0A1U7VGF50.0A0A1U7VGF5_NICSY; homeobox-leucine zipper protein ATHB-13
STRINGXP_009763971.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-124HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]