PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016487195.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-PHD | ||||||||
Protein Properties | Length: 747aa MW: 82647.4 Da PI: 5.4 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41.8 | 1.8e-13 | 569 | 619 | 5 | 55 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 t+ + +++L e F++n+yp+++++e+L k+lgLt qV+ WF N R + XP_016487195.1 569 KTYGEGAIKRLYESFKENQYPDRDAKEKLGKELGLTAHQVSKWFENARHCH 619 566777899**************************************9755 PP | |||||||
2 | PHD | 38 | 3.8e-13 | 224 | 279 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH+ Cl+++l +e++p + wlC+ C++k XP_016487195.1 224 FCAKCGAkdLPADNDIILCDGaCERGFHQLCLEPPLLKEDIPPDdeGWLCPGCDCK 279 6999*9966566********66*******************99999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 2.44E-13 | 215 | 282 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.1E-12 | 221 | 279 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.95 | 222 | 279 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 3.6E-9 | 224 | 277 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 1.2E-10 | 224 | 279 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 1.88E-25 | 224 | 276 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 225 | 276 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50071 | 13.783 | 562 | 622 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-13 | 564 | 627 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.8E-12 | 565 | 626 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-13 | 566 | 616 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.68E-11 | 567 | 623 | No hit | No description |
Pfam | PF00046 | 5.7E-11 | 569 | 620 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 747 aa Download sequence Send to blast |
MRPQLEDQTE MSTLGNTAVS PGKVARTTAR GHNTALAGKM SENPGVEQLG DACENAVQKL 60 NLSECQEKTP GQPRKRKSTS GTPISSTRLL RSKSKEKSGA SEVNNTVVTH EANEEKKRKR 120 RKKKHSKHIA VNEFTSIRGH LRYLLQRIKY EQTLIEAYSG EGWKGQSLEK IKLEKELERA 180 KAHIFRYKLK IRDLFQRVDT LLAQGRLPAS LFDNEGEIDS EDIFCAKCGA KDLPADNDII 240 LCDGACERGF HQLCLEPPLL KEDIPPDDEG WLCPGCDCKV DCIDLLNDLQ GTNLSITDSW 300 EKVYPKEAAA AASGEKLDDI SGLPSDDSED DDYNPENPDV EKNDSGDESS SDESDFFSAS 360 EDLLEVPPKD DEILALPSED SEDDDYSPDD PDKDEPAKTE SSSSDFTSDS EDLGLIVDTN 420 RLPGDELGVS SSVDNSKPSL ASQEEKPKGG RAKRNSLNNE LSDLMLSYSP LVSCKRHIER 480 LDYKKLHDET YGNESSDSSD EDFEGDPLPK VREIRSAKAA RTSPSSTPAD TKHQSGKQKV 540 SRHTDRGLCK QLKIGGMDTS EPHSSGKKKT YGEGAIKRLY ESFKENQYPD RDAKEKLGKE 600 LGLTAHQVSK WFENARHCHR HSSRWDSIMS QKVSKESPSS PNIIGEPLGT ESKSTINNVL 660 CNGVGKVEPP KQCLNGENCH AIGKSEGDLL IRETSGKKSR KPKAKNDTTD RGLDDSPANK 720 TSKKWNAQVD TPNSQNVRRS SRLQKQG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 120 | KKRKRR |
2 | 115 | 122 | KKRKRRKK |
3 | 115 | 123 | KKRKRRKKK |
4 | 116 | 121 | KRKRRK |
5 | 117 | 123 | RKRRKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-173 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016487195.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein-like | ||||
Refseq | XP_016487196.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein-like | ||||
TrEMBL | A0A1S4BE37 | 0.0 | A0A1S4BE37_TOBAC; pathogenesis-related homeodomain protein-like | ||||
STRING | XP_009775281.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7220 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 2e-82 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |