PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486840.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 176aa    MW: 19658.4 Da    PI: 7.3745
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++lfC  ++  lC+ C ++ H
  XP_016486840.1  4 LCDVCESAAAILFCAADEAALCRACDEKVH 33
                    7**************************998 PP
2zf-B_box29.41.7e-095292238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                    + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  XP_016486840.1 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtHS 92
                    6799**************************99966566675 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000219.98E-7345No hitNo description
PfamPF006433.5E-6342IPR000315B-box-type zinc finger
SuperFamilySSF578456.64E-54888No hitNo description
SMARTSM003364.2E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.2435196IPR000315B-box-type zinc finger
PfamPF006431.4E-75291IPR000315B-box-type zinc finger
CDDcd000213.79E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAKP NDVPRCDICE  60
NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HSRYLLLRQK VEFPGDKPGP TEELARKTLD  120
PGENKREYSH SPKPMVEDNQ QNRRFSPVPV SDGSADDHAK KDKMIDLNVK PNRYHG
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754413e-48HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599859.11e-129PREDICTED: B-box zinc finger protein 19-like
RefseqXP_016486840.11e-129PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM53e-71BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1S4BD331e-128A0A1S4BD33_TOBAC; B-box zinc finger protein 19-like
STRINGXP_009599859.11e-128(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-73DBB family protein