PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486814.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 762aa MW: 87086.9 Da PI: 6.7305

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486814.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.6	1.2e-29	80	174	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn YA++vGFs+r+s s++s+r+g i++r fvC +eg+r e++k + +r+raetr+gCka+l+vk ++ g+w+v+ +++eHnHel+p XP_016486814.1 80 FYNLYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAREGFRVEKEKPgrdggGARIKRPRAETRVGCKAMLVVKIQNLGRWVVSGFVKEHNHELVP 174 9***************************************99999999999999***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-27	80	174	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.0E-32	295	387	IPR018289	MULE transposase domain
Pfam	PF04434	4.3E-10	564	609	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.756	575	611	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.5E-6	586	613	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence Send to blast
MELEPLGIRN DVIEFDMFGL GVGDETIDIE HPIEGGENNQ LLEPFDGIVS GRISGEVYGD 60 MNLEPYEGME FESEEAAKAF YNLYARRVGF STRVSMSRRS RRDGAIIQRS FVCAREGFRV 120 EKEKPGRDGG GARIKRPRAE TRVGCKAMLV VKIQNLGRWV VSGFVKEHNH ELVPPDKVHC 180 LRSHRHVSGR AKSLIDTLQG AGIGPSGIMS ALIKEYGGIR SVGFTERDCR NYMRSSKQRT 240 LGGDPQTLLD YLKQKHLENP SFFYAVQGDE DHCMSNIFWA DPKARTNFSY FGDTVTFDTT 300 YRSNRYRLPF APFTGVNHHG QPVLFGCALL INESKASFSW LFSTWLMAMC GKPPVSITTD 360 HDRVIRLAVR QVFPEARHRF CKWHIFKECQ EKLSHVLSEH INFEAEFHKC VSLTEFIEEF 420 EACWFTLIDK YDLGENEWLQ AIYADRKQWV PVYLRDTFFA EMSIMQHSDS MNSYFDGYVN 480 ASTTLQQFIK LYEKAVESRY EKEVKADYDT MHIGPALKTP SPMEKQAAEI YTRKLFIKFQ 540 EELVETLTFL ATKVDDNEAT TVFQVAKFGE SHKSYLVHYN VREIKASCSC QMFEFSSLLC 600 RHILTVFRVT NVLTLPPCYV LKRWTRNAKS GLMLEEQTCN LLNSYQESFN DRYNNLQREA 660 FKYVDEGAKD EECYQVAMDA LREAANKVAI FNKTGAGVSN SGGTCKEVFA TLESRVNNPF 720 EARQLSGGPS TPVIVLSFLS GYFYSNNVVC THDDLAKMFT QL

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence Send to blast

MELEPLGIRN DVIEFDMFGL GVGDETIDIE HPIEGGENNQ LLEPFDGIVS GRISGEVYGD  60
MNLEPYEGME FESEEAAKAF YNLYARRVGF STRVSMSRRS RRDGAIIQRS FVCAREGFRV  120
EKEKPGRDGG GARIKRPRAE TRVGCKAMLV VKIQNLGRWV VSGFVKEHNH ELVPPDKVHC  180
LRSHRHVSGR AKSLIDTLQG AGIGPSGIMS ALIKEYGGIR SVGFTERDCR NYMRSSKQRT  240
LGGDPQTLLD YLKQKHLENP SFFYAVQGDE DHCMSNIFWA DPKARTNFSY FGDTVTFDTT  300
YRSNRYRLPF APFTGVNHHG QPVLFGCALL INESKASFSW LFSTWLMAMC GKPPVSITTD  360
HDRVIRLAVR QVFPEARHRF CKWHIFKECQ EKLSHVLSEH INFEAEFHKC VSLTEFIEEF  420
EACWFTLIDK YDLGENEWLQ AIYADRKQWV PVYLRDTFFA EMSIMQHSDS MNSYFDGYVN  480
ASTTLQQFIK LYEKAVESRY EKEVKADYDT MHIGPALKTP SPMEKQAAEI YTRKLFIKFQ  540
EELVETLTFL ATKVDDNEAT TVFQVAKFGE SHKSYLVHYN VREIKASCSC QMFEFSSLLC  600
RHILTVFRVT NVLTLPPCYV LKRWTRNAKS GLMLEEQTCN LLNSYQESFN DRYNNLQREA  660
FKYVDEGAKD EECYQVAMDA LREAANKVAI FNKTGAGVSN SGGTCKEVFA TLESRVNNPF  720
EARQLSGGPS TPVIVLSFLS GYFYSNNVVC THDDLAKMFT QL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486814.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S4BD49	0.0	A0A1S4BD49_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRING	XP_009775261.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]