PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016486586.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 31286.6 Da PI: 9.768 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.8 | 2.8e-19 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+++vk +G g+W+++ar g++R +k+c++rw +yl XP_016486586.1 23 KGPWTAEEDKLLIEYVKSHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 70 79******************************9*************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.7e-17 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ XP_016486586.1 76 RGQITPHEERIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.185 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-31 | 20 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-16 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.46E-11 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 25.025 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 76 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.34E-10 | 80 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MLFEIMSSEQ MGNWGILEEG WRKGPWTAEE DKLLIEYVKS HGEGRWNSVA RLTGLKRNGK 60 SCRLRWVNYL RPDLKRGQIT PHEERIILEL HAKWGNRWST IARSLPGRTD NEIKNYWRTH 120 FKKKTKNSCA NSEKSRARLW KKQHFLQQQQ LQQQQQINNQ IDIKKVMSLF DPNENKVPTM 180 PQAKQEMTIL YPRTVDQQNQ VGFFYSMLNS CSSVSVPEPS SNEDIMWDGL WNLDDFYGQF 240 INTTTYNKTI TTPNCLQTMA TTPAFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-28 | 23 | 125 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 6e-41 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 6e-41 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016486586.1 | 0.0 | PREDICTED: myb-related protein 305-like | ||||
TrEMBL | A0A1S4BCP3 | 0.0 | A0A1S4BCP3_TOBAC; myb-related protein 305-like | ||||
STRING | XP_009589042.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 9e-78 | myb domain protein 79 |