PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486565.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28903.5 Da    PI: 9.6816
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486565.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.6e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_016486565.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                    79***********************************************8 PP
2K-box107.81.2e-35931894100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +s+ s++ea+++++qqe+akL+++i+ +q+ +R+++Ge L+sLs ++L++Le +Lek++ ++RskKnell+++ie +qk+e e+q++n++Lr+k+
  XP_016486565.1  93 TSQGSVSEANTQYYQQEAAKLRRQIRDIQTYNRQIVGEALSSLSPRDLKNLEGKLEKAIGRVRSKKNELLFSEIELMQKREIEMQNANMYLRAKI 187
                     455569****************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_016486565.1 188 AE 189
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.2631777IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-401776IPR002100Transcription factor, MADS-box
CDDcd002658.46E-461894No hitNo description
SuperFamilySSF554552.22E-331893IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003199.4E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-335475IPR002100Transcription factor, MADS-box
PfamPF014862.2E-25101187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.572103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEFPNEEFES SNSQRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVRA TIDRYKKHHA DSTSQGSVSE ANTQYYQQEA AKLRRQIRDI  120
QTYNRQIVGE ALSSLSPRDL KNLEGKLEKA IGRVRSKKNE LLFSEIELMQ KREIEMQNAN  180
MYLRAKIAEV ERAQQQMNLM PGGSEYNHQQ QPMSTSQNYN DARNFLPVNL LEPNHHYSRH  240
DDQTALQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-2018101186Myocyte-specific enhancer factor 2A
3kov_B2e-2018101186Myocyte-specific enhancer factor 2A
3kov_I2e-2018101186Myocyte-specific enhancer factor 2A
3kov_J2e-2018101186Myocyte-specific enhancer factor 2A
3p57_A2e-2018101186Myocyte-specific enhancer factor 2A
3p57_B2e-2018101186Myocyte-specific enhancer factor 2A
3p57_C2e-2018101186Myocyte-specific enhancer factor 2A
3p57_D2e-2018101186Myocyte-specific enhancer factor 2A
3p57_I2e-2018101186Myocyte-specific enhancer factor 2A
3p57_J2e-2018101186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6991780.0JQ699178.1 Nicotiana benthamiana shatterproof (SHP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762633.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X2
RefseqXP_009762634.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X3
RefseqXP_016486565.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ93XH41e-126MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A1S4BCA50.0A0A1S4BCA5_TOBAC; floral homeotic protein AGAMOUS-like isoform X2
TrEMBLA0A1U7V8C10.0A0A1U7V8C1_NICSY; floral homeotic protein AGAMOUS isoform X2
STRINGXP_009762632.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-114MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]