PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486557.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 252aa MW: 29276 Da PI: 9.6816

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486557.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.2	1.6e-31	25	74	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ XP_016486557.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74 79***********************************************8 PP
2	K-box	104.1	1.8e-34	93	187	4	98
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +s+ s++ea+++++qqe+akL+++i+ +q+ +R+++Ge L+sLs ++L++Le +Lek++ ++RskKnell+++ie +qk+e e+q++n++Lr+k+ XP_016486557.1 93 TSQGSVSEANTQYYQQEAAKLRRQIRDIQTYNRQIVGEALSSLSPRDLKNLEGKLEKAIGRVRSKKNELLFSEIELMQKREIEMQNANMYLRAKM 187 455569**************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.263	17	77	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-40	17	76	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.05E-46	18	94	No hit	No description
SuperFamily	SSF55455	2.22E-33	18	93	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-33	19	39	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	19	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.6E-27	26	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-33	39	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-33	54	75	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	8.2E-25	101	187	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.387	103	196	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090376	Biological Process	seed trichome differentiation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MEFPNEEFES SNSQRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYANNSVRA TIDRYKKHHA DSTSQGSVSE ANTQYYQQEA AKLRRQIRDI 120 QTYNRQIVGE ALSSLSPRDL KNLEGKLEKA IGRVRSKKNE LLFSEIELMQ KREIEMQNAN 180 MYLRAKMLQI AEVERAQQQM NLMPGGSEYN HQQQPMSTSQ NYNDARNFLP VNLLEPNHHY 240 SRHDDQTALQ LV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	2e-20	18	89	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	2e-20	18	89	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	2e-20	18	89	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	2e-20	18	89	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	2e-20	18	101	1	86	Myocyte-specific enhancer factor 2A
3kov_B	2e-20	18	101	1	86	Myocyte-specific enhancer factor 2A
3kov_I	2e-20	18	101	1	86	Myocyte-specific enhancer factor 2A
3kov_J	2e-20	18	101	1	86	Myocyte-specific enhancer factor 2A
3p57_A	2e-20	18	101	1	86	Myocyte-specific enhancer factor 2A
3p57_B	2e-20	18	101	1	86	Myocyte-specific enhancer factor 2A
3p57_C	2e-20	18	101	1	86	Myocyte-specific enhancer factor 2A
3p57_D	2e-20	18	101	1	86	Myocyte-specific enhancer factor 2A
3p57_I	2e-20	18	101	1	86	Myocyte-specific enhancer factor 2A
3p57_J	2e-20	18	101	1	86	Myocyte-specific enhancer factor 2A
5f28_A	2e-20	18	101	2	87	MEF2C
5f28_B	2e-20	18	101	2	87	MEF2C
5f28_C	2e-20	18	101	2	87	MEF2C
5f28_D	2e-20	18	101	2	87	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ699178	0.0	JQ699178.1 Nicotiana benthamiana shatterproof (SHP) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009762632.1	0.0	PREDICTED: floral homeotic protein AGAMOUS isoform X1
Refseq	XP_016486557.1	0.0	PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
Swissprot	Q93XH4	1e-124	MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBL	A0A1S4BCG1	0.0	A0A1S4BCG1_TOBAC; floral homeotic protein AGAMOUS-like isoform X1
TrEMBL	A0A1U7V318	0.0	A0A1U7V318_NICSY; floral homeotic protein AGAMOUS isoform X1
STRING	XP_009762632.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-111	MIKC_MADS family protein

Publications ? help Back to Top
Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development. Plant Mol. Biol., 2001. 45(5): p. 541-53 [PMID:11414613] Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]