PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486498.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 392aa    MW: 43914.6 Da    PI: 6.8418
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486498.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.71.7e-85453751316
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++ s+g+l+ a+a+L+++ +las +gd+mqRlaa f+  La rl++ ++++ykal+     +++ ++  +++ +f +++P+l +++
  XP_016486498.1  45 LIQLLLTCANHASTGNLHHADACLSQILQLASITGDSMQRLAAWFASSLAIRLVKRWPGIYKALNHGVPVPSRIVDLDQSRIIFAKAFPYLGLAY 139
                     689*************************************************************9999999999999999999************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      + N+ + +a+++++ +Hi+D++ +    W+++l+ + + p+++p+l+iT v++    +k +lee+++r++k A++l+++f+fn l   +l +l+
  XP_016486498.1 140 AVINRVLIQAMSEDRIIHIVDLGSGDTKLWIPFLKNIVNLPNETPNLKITCVNN----NKAMLEEMASRIKKEAKALDISFQFNSL-NVDLRELT 229
                     ******************************************************....9**************************5.889***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                     l++L+vk gE+la  +vl+lh ll                 +++v+  ++ +e+L ++ slsPkv+++veqeadhn +++++rf+e l+yysalf
  XP_016486498.1 230 LDMLKVKAGESLAFVSVLNLHVLLveddrinsqfnlnknnnNNNVKDCKRMSEFLTMLHSLSPKVLILVEQEADHNLSKLVDRFVEGLHYYSALF 324
                     **************************************98877777777999******************************************* PP

            GRAS 269 dsleaklpres....eerikvErellgreivnvvacegaerrerhetlekWr 316
                     ds+++++   +    eer+ vE++ lg+ei+n+vaceg er+erhe+++kW 
  XP_016486498.1 325 DSIDTTFKGSNcslcEERVAVEQM-LGKEIENMVACEGLEREERHERFGKWI 375
                     ******998889999*********.**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.53319392IPR005202Transcription factor GRAS
PfamPF035145.9E-8345375IPR005202Transcription factor GRAS
Gene3DG3DSA:3.40.50.1501.5E-5142223IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MNISSPAIKP DVTLSLTLSS STSSTTTTTD ASTDALNPKE RGVKLIQLLL TCANHASTGN  60
LHHADACLSQ ILQLASITGD SMQRLAAWFA SSLAIRLVKR WPGIYKALNH GVPVPSRIVD  120
LDQSRIIFAK AFPYLGLAYA VINRVLIQAM SEDRIIHIVD LGSGDTKLWI PFLKNIVNLP  180
NETPNLKITC VNNNKAMLEE MASRIKKEAK ALDISFQFNS LNVDLRELTL DMLKVKAGES  240
LAFVSVLNLH VLLVEDDRIN SQFNLNKNNN NNNVKDCKRM SEFLTMLHSL SPKVLILVEQ  300
EADHNLSKLV DRFVEGLHYY SALFDSIDTT FKGSNCSLCE ERVAVEQMLG KEIENMVACE  360
GLEREERHER FGKWIVSPCD YGTILWKMPR DW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-304036414311Protein SCARECROW
5b3h_A2e-304036413310Protein SCARECROW
5b3h_D2e-304036413310Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0126390.0AB012639.1 Nicotiana sylvestris Lhcb1*7 gene for light harvesting chlorophyll a/b-binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486498.10.0PREDICTED: scarecrow-like protein 3
TrEMBLA0A1S4BCF10.0A0A1S4BCF1_TOBAC; scarecrow-like protein 3
STRINGXP_009759684.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135701216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-85scarecrow-like 3