PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486475.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 296aa MW: 32313.5 Da PI: 7.1115

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.5e-39	29	89	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +a+kcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrn+PvGgg+rk+k+s+ XP_016486475.1 29 QPQAVKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGILRNIPVGGGCRKSKRSK 89 56899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	27	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-33	31	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.311	33	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MQDIHSIIGG GGGRFYGGGG GDRRLRLNQP QAVKCPRCDS LNTKFCYYNN YNLSQPRHFC 60 KSCRRYWTKG GILRNIPVGG GCRKSKRSKS NPSAVSTADE TSQENMSKSN SNSGSESSSL 120 TAITSSAAAA ANTSVAMTPE VGSGNSFNSN LPDFPESSFL VTETTKGDCI DQQLVVGHTT 180 EEQIFQNIGT YSFNVNNISM YQNSNDQQWN QQPKIVGTGP ADGMKMHEMS AACFFDRTVH 240 VELSGRRAND GGLAPMDWQT GGGDGGLFGM MDNSDHQSYW CQRQWGENDH SFNYLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	19	GGRFYGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	7e-50	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486475.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	A0A1S4BC17	0.0	A0A1S4BC17_TOBAC; dof zinc finger protein DOF5.4-like
STRING	XP_009590236.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16953	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-37	OBF binding protein 4