PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486465.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 707aa MW: 80033.9 Da PI: 6.4589

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486465.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	46	1e-14	520	563	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++i+l++++ s++ +AA +Lgv+ ++LKriCR yGI RWP XP_016486465.1 520 HNINLKKIEDRSSMTQDAAADDLGVGKSTLKRICRLYGITRWPP 563 799****************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.946	506	596	IPR003035	RWP-RK domain
Pfam	PF02042	7.2E-12	521	564	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	3.3E-12	623	701	No hit	No description
SuperFamily	SSF54277	3.24E-12	623	704	No hit	No description
PROSITE profile	PS51745	17.288	624	706	IPR000270	PB1 domain
SMART	SM00666	1.8E-10	624	706	IPR000270	PB1 domain
Pfam	PF00564	7.0E-12	633	705	IPR000270	PB1 domain
CDD	cd05992	2.89E-10	646	704	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MESVFSEQAW SRQPNGIWVF WSERDDVEQL QNHFSFTADV VTKRMAIKER VKIALQHVEK 60 LSCNYLIQYW ASIVIDGQTF LTTSDQPFGL TRLEYGLCSY RKKCLSHAIP VELKNGTQCE 120 NDFGPPGRVF KHRLPELCTD VKNYSQQEFP LRDDAVAWGI QWCYTVPVFD SSRDTFVGVL 180 ELVTSHQTNK WIFQNSVLPI FKMLQVLDDR QCALGGLYKA IEVVCQKHQF LFAQIWVSVA 240 DSWCTGKAIT VRQRHIAIND NQNLSLFKYA SGLQYILEGY GVVGRAFSSK SSCFCRDVTQ 300 LSIIEYPLVT CAREAGLTGC FAICLSALGN DDNIYILEFF LPPNELLHRN LQDFVKLVLD 360 TVKQQLHRFK VAVGHDFGEK LPVEVIKISS DDELDSFDIC QTTKELHNVE PLPNGGELML 420 LDTPNQQSFS SETNQQLSLD IDEINAARDS IAVSEELCNS AGSSTSAETS QNKERKLQLE 480 LSTRQAKQGA NAVNKRKNGK RTLTSESEIQ KERERIERDH NINLKKIEDR SSMTQDAAAD 540 DLGVGKSTLK RICRLYGITR WPPKNKEKKR KCSHSRKMKS ILPAEEDVNA STKFQQSSDS 600 PNKEDTINGA KVGAHVTEIR DGTAVITKVK SGDRLLKLQL TLSSMMKDLE EEVAKRVESS 660 IESFDFTYVD KEGDTILIKC DEDLTECFLH CRSSENATVK MFITPKS

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MESVFSEQAW SRQPNGIWVF WSERDDVEQL QNHFSFTADV VTKRMAIKER VKIALQHVEK  60
LSCNYLIQYW ASIVIDGQTF LTTSDQPFGL TRLEYGLCSY RKKCLSHAIP VELKNGTQCE  120
NDFGPPGRVF KHRLPELCTD VKNYSQQEFP LRDDAVAWGI QWCYTVPVFD SSRDTFVGVL  180
ELVTSHQTNK WIFQNSVLPI FKMLQVLDDR QCALGGLYKA IEVVCQKHQF LFAQIWVSVA  240
DSWCTGKAIT VRQRHIAIND NQNLSLFKYA SGLQYILEGY GVVGRAFSSK SSCFCRDVTQ  300
LSIIEYPLVT CAREAGLTGC FAICLSALGN DDNIYILEFF LPPNELLHRN LQDFVKLVLD  360
TVKQQLHRFK VAVGHDFGEK LPVEVIKISS DDELDSFDIC QTTKELHNVE PLPNGGELML  420
LDTPNQQSFS SETNQQLSLD IDEINAARDS IAVSEELCNS AGSSTSAETS QNKERKLQLE  480
LSTRQAKQGA NAVNKRKNGK RTLTSESEIQ KERERIERDH NINLKKIEDR SSMTQDAAAD  540
DLGVGKSTLK RICRLYGITR WPPKNKEKKR KCSHSRKMKS ILPAEEDVNA STKFQQSSDS  600
PNKEDTINGA KVGAHVTEIR DGTAVITKVK SGDRLLKLQL TLSSMMKDLE EEVAKRVESS  660
IESFDFTYVD KEGDTILIKC DEDLTECFLH CRSSENATVK MFITPKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	562	570	PKNKEKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486465.1	0.0	PREDICTED: protein NLP7-like isoform X2
TrEMBL	A0A1S4BC09	0.0	A0A1S4BC09_TOBAC; protein NLP7-like isoform X2
STRING	XP_009601280.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-53	Nin-like family protein