PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486464.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 723aa MW: 81807 Da PI: 6.4585

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	46	1.1e-14	536	579	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++i+l++++ s++ +AA +Lgv+ ++LKriCR yGI RWP XP_016486464.1 536 HNINLKKIEDRSSMTQDAAADDLGVGKSTLKRICRLYGITRWPP 579 799****************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.946	522	612	IPR003035	RWP-RK domain
Pfam	PF02042	7.4E-12	537	580	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	3.4E-12	639	717	No hit	No description
SuperFamily	SSF54277	3.27E-12	639	720	No hit	No description
SMART	SM00666	1.8E-10	640	722	IPR000270	PB1 domain
PROSITE profile	PS51745	17.288	640	722	IPR000270	PB1 domain
Pfam	PF00564	7.2E-12	649	721	IPR000270	PB1 domain
CDD	cd05992	3.13E-10	662	720	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
MESVFSEQAW SRQPNGIWVF WSERDDVEQL QNHFSFTADV VTKRMAIKER VKIALQHVEK 60 LSCNYLIQYW ASIVIDGQTF LTTSDQPFGL TRLEYGLCSY RKKCLSHAIP VELKNGTQCE 120 NDFGPPGRVF KHRLPELCTD VKNYSQQEFP LRDDAVAWGI QWCYTVPVFD SSRDTFVGVL 180 ELVTSHQTNK WIFQNSVLPI FKMLQVVDLK SPDSYCPLNL KVLDDRQCAL GGLYKAIEVV 240 CQKHQFLFAQ IWVSVADSWC TGKAITVRQR HIAINDNQNL SLFKYASGLQ YILEGYGVVG 300 RAFSSKSSCF CRDVTQLSII EYPLVTCARE AGLTGCFAIC LSALGNDDNI YILEFFLPPN 360 ELLHRNLQDF VKLVLDTVKQ QLHRFKVAVG HDFGEKLPVE VIKISSDDEL DSFDICQTTK 420 ELHNVEPLPN GGELMLLDTP NQQSFSSETN QQLSLDIDEI NAARDSIAVS EELCNSAGSS 480 TSAETSQNKE RKLQLELSTR QAKQGANAVN KRKNGKRTLT SESEIQKERE RIERDHNINL 540 KKIEDRSSMT QDAAADDLGV GKSTLKRICR LYGITRWPPK NKEKKRKCSH SRKMKSILPA 600 EEDVNASTKF QQSSDSPNKE DTINGAKVGA HVTEIRDGTA VITKVKSGDR LLKLQLTLSS 660 MMKDLEEEVA KRVESSIESF DFTYVDKEGD TILIKCDEDL TECFLHCRSS ENATVKMFIT 720 PKS

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

MESVFSEQAW SRQPNGIWVF WSERDDVEQL QNHFSFTADV VTKRMAIKER VKIALQHVEK  60
LSCNYLIQYW ASIVIDGQTF LTTSDQPFGL TRLEYGLCSY RKKCLSHAIP VELKNGTQCE  120
NDFGPPGRVF KHRLPELCTD VKNYSQQEFP LRDDAVAWGI QWCYTVPVFD SSRDTFVGVL  180
ELVTSHQTNK WIFQNSVLPI FKMLQVVDLK SPDSYCPLNL KVLDDRQCAL GGLYKAIEVV  240
CQKHQFLFAQ IWVSVADSWC TGKAITVRQR HIAINDNQNL SLFKYASGLQ YILEGYGVVG  300
RAFSSKSSCF CRDVTQLSII EYPLVTCARE AGLTGCFAIC LSALGNDDNI YILEFFLPPN  360
ELLHRNLQDF VKLVLDTVKQ QLHRFKVAVG HDFGEKLPVE VIKISSDDEL DSFDICQTTK  420
ELHNVEPLPN GGELMLLDTP NQQSFSSETN QQLSLDIDEI NAARDSIAVS EELCNSAGSS  480
TSAETSQNKE RKLQLELSTR QAKQGANAVN KRKNGKRTLT SESEIQKERE RIERDHNINL  540
KKIEDRSSMT QDAAADDLGV GKSTLKRICR LYGITRWPPK NKEKKRKCSH SRKMKSILPA  600
EEDVNASTKF QQSSDSPNKE DTINGAKVGA HVTEIRDGTA VITKVKSGDR LLKLQLTLSS  660
MMKDLEEEVA KRVESSIESF DFTYVDKEGD TILIKCDEDL TECFLHCRSS ENATVKMFIT  720
PKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	578	586	PKNKEKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486464.1	0.0	PREDICTED: protein NLP7-like isoform X1
TrEMBL	A0A1S4BC54	0.0	A0A1S4BC54_TOBAC; protein NLP7-like isoform X1
STRING	XP_009601280.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13034	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	3e-56	Nin-like family protein