PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486443.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 577aa MW: 65461.6 Da PI: 7.681

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486443.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	44.8	2.4e-14	520	563	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++i+l++++ s++ +AA Lgv+ ++LKriCR yGI RWP XP_016486443.1 520 HNINLKKIEDRSSMTQDAAADGLGVGKSTLKRICRLYGITRWPP 563 79*****************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.707	506	577	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-11	521	564	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MECVFSEQAW SRQPNGLWVF WSERDDAEQL QNHFSFTADV VTKRMAIKER VKIALQHVEK 60 LSCNYLIQYW ASIVIDGQTF LTTSDQPFGL TRLEYGLCSY RKKCLSHAIP VELKNGTQCE 120 NDLGPPGRVF KHRLPELCTN MKNYSKQEFP LRDDAVAWSI QWCYTVPVFD PSRDTFVGVL 180 ELVTSHQTKE WICGNSVLPI FKMLQVLDDR QCALGGLYKA IEVVCQKHQF LFAQIWVSVA 240 DSWCPGKAIT VRQRHIAINN NQNLSLFKYA SGLQYILEGY GVVGRAFSSK SSCFCRDVTR 300 LSIMEYPLVT CAREAGLTSC FAICLSAPGN DDNVFILEFF LPPNELLHRN LQDFLKLVLD 360 TAKQQLQHVK VAVGHDFGEK LPVEVIKISS DDELDSFDIC QTTKELHNVE PLPNGGELML 420 LDTPNQQSFS SETNQQLSLD IDEINAERDS IAVSEEQCNS AGSSTSAKTS QNKERKLQLE 480 LSTRQAKQGA NAVNKRKNGK RTLTSESEIQ KERERIEQDH NINLKKIEDR SSMTQDAAAD 540 GLGVGKSTLK RICRLYGITR WPPKNKEKKR KCSHSRK

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MECVFSEQAW SRQPNGLWVF WSERDDAEQL QNHFSFTADV VTKRMAIKER VKIALQHVEK  60
LSCNYLIQYW ASIVIDGQTF LTTSDQPFGL TRLEYGLCSY RKKCLSHAIP VELKNGTQCE  120
NDLGPPGRVF KHRLPELCTN MKNYSKQEFP LRDDAVAWSI QWCYTVPVFD PSRDTFVGVL  180
ELVTSHQTKE WICGNSVLPI FKMLQVLDDR QCALGGLYKA IEVVCQKHQF LFAQIWVSVA  240
DSWCPGKAIT VRQRHIAINN NQNLSLFKYA SGLQYILEGY GVVGRAFSSK SSCFCRDVTR  300
LSIMEYPLVT CAREAGLTSC FAICLSAPGN DDNVFILEFF LPPNELLHRN LQDFLKLVLD  360
TAKQQLQHVK VAVGHDFGEK LPVEVIKISS DDELDSFDIC QTTKELHNVE PLPNGGELML  420
LDTPNQQSFS SETNQQLSLD IDEINAERDS IAVSEEQCNS AGSSTSAKTS QNKERKLQLE  480
LSTRQAKQGA NAVNKRKNGK RTLTSESEIQ KERERIEQDH NINLKKIEDR SSMTQDAAAD  540
GLGVGKSTLK RICRLYGITR WPPKNKEKKR KCSHSRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	562	570	PKNKEKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486443.1	0.0	PREDICTED: protein NLP6-like isoform X2
TrEMBL	A0A1S4BC92	0.0	A0A1S4BC92_TOBAC; protein NLP6-like isoform X2
STRING	XP_009767945.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-55	Nin-like family protein