PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486442.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 593aa MW: 67235.6 Da PI: 7.5246

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	44.8	2.4e-14	536	579	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++i+l++++ s++ +AA Lgv+ ++LKriCR yGI RWP XP_016486442.1 536 HNINLKKIEDRSSMTQDAAADGLGVGKSTLKRICRLYGITRWPP 579 79*****************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.707	522	593	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-11	537	580	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MECVFSEQAW SRQPNGLWVF WSERDDAEQL QNHFSFTADV VTKRMAIKER VKIALQHVEK 60 LSCNYLIQYW ASIVIDGQTF LTTSDQPFGL TRLEYGLCSY RKKCLSHAIP VELKNGTQCE 120 NDLGPPGRVF KHRLPELCTN MKNYSKQEFP LRDDAVAWSI QWCYTVPVFD PSRDTFVGVL 180 ELVTSHQTKE WICGNSVLPI FKMLQVVDLK SPDSYCPLDL KVLDDRQCAL GGLYKAIEVV 240 CQKHQFLFAQ IWVSVADSWC PGKAITVRQR HIAINNNQNL SLFKYASGLQ YILEGYGVVG 300 RAFSSKSSCF CRDVTRLSIM EYPLVTCARE AGLTSCFAIC LSAPGNDDNV FILEFFLPPN 360 ELLHRNLQDF LKLVLDTAKQ QLQHVKVAVG HDFGEKLPVE VIKISSDDEL DSFDICQTTK 420 ELHNVEPLPN GGELMLLDTP NQQSFSSETN QQLSLDIDEI NAERDSIAVS EEQCNSAGSS 480 TSAKTSQNKE RKLQLELSTR QAKQGANAVN KRKNGKRTLT SESEIQKERE RIEQDHNINL 540 KKIEDRSSMT QDAAADGLGV GKSTLKRICR LYGITRWPPK NKEKKRKCSH SRK

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MECVFSEQAW SRQPNGLWVF WSERDDAEQL QNHFSFTADV VTKRMAIKER VKIALQHVEK  60
LSCNYLIQYW ASIVIDGQTF LTTSDQPFGL TRLEYGLCSY RKKCLSHAIP VELKNGTQCE  120
NDLGPPGRVF KHRLPELCTN MKNYSKQEFP LRDDAVAWSI QWCYTVPVFD PSRDTFVGVL  180
ELVTSHQTKE WICGNSVLPI FKMLQVVDLK SPDSYCPLDL KVLDDRQCAL GGLYKAIEVV  240
CQKHQFLFAQ IWVSVADSWC PGKAITVRQR HIAINNNQNL SLFKYASGLQ YILEGYGVVG  300
RAFSSKSSCF CRDVTRLSIM EYPLVTCARE AGLTSCFAIC LSAPGNDDNV FILEFFLPPN  360
ELLHRNLQDF LKLVLDTAKQ QLQHVKVAVG HDFGEKLPVE VIKISSDDEL DSFDICQTTK  420
ELHNVEPLPN GGELMLLDTP NQQSFSSETN QQLSLDIDEI NAERDSIAVS EEQCNSAGSS  480
TSAKTSQNKE RKLQLELSTR QAKQGANAVN KRKNGKRTLT SESEIQKERE RIEQDHNINL  540
KKIEDRSSMT QDAAADGLGV GKSTLKRICR LYGITRWPPK NKEKKRKCSH SRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	578	586	PKNKEKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486442.1	0.0	PREDICTED: protein NLP6-like isoform X1
TrEMBL	A0A1S4BC43	0.0	A0A1S4BC43_TOBAC; protein NLP6-like isoform X1
STRING	XP_009767945.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13034	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	5e-58	Nin-like family protein