PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486392.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 349aa    MW: 37857.6 Da    PI: 8.3292
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486392.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702228.81e-701232793153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsstk 90 
                     +g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++       +++++  +++ +++ +s+l++++
  XP_016486392.1 123 VGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALNQQHNQQQqtqqlslRADSNIIPKRPRENPSSSLACSR 217
                     7899****************************************************99888777766777774444444444467899******* PP

          DUF702  91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     l++++s  e+  + +P+evss+avfrcv+vs++dd+e+++aYqtav+igGh+fkGiLydqG+e
  XP_016486392.1 218 LPTTSSGLEVGGH-FPAEVSSQAVFRCVKVSAIDDAEDQFAYQTAVNIGGHLFKGILYDQGPE 279
                     ****999777765.***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.9E-68125279IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-26127169IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.8E-28230278IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSGFFTLGGG GGGGNKEQQQ QQEQDQLATN SLLLFKNEEI YNKGFELWQQ YYQLHQQRAQ  60
TPQHQVQEMD FSVGVGPSNN RRIISGSSSS GNNNIVGDDN NNHNYSNSFR VMRPTGGSSS  120
SGVGGMNCQD CGNQAKKDCP HLRCRTCCKS RGFQCQTHVK STWVPAAKRR ERQQQLAALN  180
QQHNQQQQTQ QLSLRADSNI IPKRPRENPS SSLACSRLPT TSSGLEVGGH FPAEVSSQAV  240
FRCVKVSAID DAEDQFAYQT AVNIGGHLFK GILYDQGPEG RYSGGGESSS GSGAAQQALN  300
FITGATTSTT AAAATSHQQQ HGTMFDPSVY PTPINAFMAG TQFFPPPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064345e-45AC006434.5 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence.
GenBankAC0237545e-45AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence.
GenBankAY8006205e-45AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBankAY9247305e-45AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
GenBankCP0026845e-45CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486392.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
TrEMBLA0A1S4BBZ40.0A0A1S4BBZ4_TOBAC; protein SHI RELATED SEQUENCE 1-like isoform X1
STRINGXP_009599252.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.13e-66Lateral root primordium (LRP) protein-related