PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486373.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 411aa MW: 44020.7 Da PI: 5.7028

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.1e-05	251	271	35	55
TS-STCHHHHHHHHHHHHHHH CS HLH 35 skKlsKaeiLekAveYIksLq 55 K +Ka++L +++eY+k+Lq XP_016486373.1 251 RSKTDKASMLDEVIEYLKQLQ 271 579*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.3E-7	245	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.85E-4	248	274	No hit	No description
SuperFamily	SSF47459	4.84E-7	250	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MNQCVPSWEF EDTSTPPKLP LQTQSNSLAP GVPSLDYEVA ELTWENGQLA MHGLGPPRVP 60 NNKPISNYGG TLESIVNQGT RSIPHHHQKS ALNGSGHGCD EVVPWFNYNH VVADTPLVPG 120 LLTMAKDALV PCSANSNYHN RPPSSVQVPG LDGSTHVGSC STGATNSRDW MAVPRVRMEP 180 THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT SSDKQCTNRT 240 GDDHDSVCHS RSKTDKASML DEVIEYLKQL QSQVNMMSRM NMSPAMMLPL AMQQQLQMSM 300 MAAPMGMGMG MGMGMGMTGV AGVLDINTLS RPNITGLPPF LHPTAAAAAA FMQPMTSWDG 360 STDRLNAAAV PDPLAALLAC QSQPMTMDAY SRMAALYQQF LQSAAGSGPK N

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MNQCVPSWEF EDTSTPPKLP LQTQSNSLAP GVPSLDYEVA ELTWENGQLA MHGLGPPRVP  60
NNKPISNYGG TLESIVNQGT RSIPHHHQKS ALNGSGHGCD EVVPWFNYNH VVADTPLVPG  120
LLTMAKDALV PCSANSNYHN RPPSSVQVPG LDGSTHVGSC STGATNSRDW MAVPRVRMEP  180
THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT SSDKQCTNRT  240
GDDHDSVCHS RSKTDKASML DEVIEYLKQL QSQVNMMSRM NMSPAMMLPL AMQQQLQMSM  300
MAAPMGMGMG MGMGMGMTGV AGVLDINTLS RPNITGLPPF LHPTAAAAAA FMQPMTSWDG  360
STDRLNAAAV PDPLAALLAC QSQPMTMDAY SRMAALYQQF LQSAAGSGPK N

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486373.1	0.0	PREDICTED: transcription factor UNE10-like isoform X4
TrEMBL	A0A1S4BC26	0.0	A0A1S4BC26_TOBAC; transcription factor UNE10-like isoform X4
STRING	XP_009792481.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-50	bHLH family protein