PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486175.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 431aa    MW: 46284.5 Da    PI: 9.2373
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.87.3e-21288350163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+e kre+rkq+NRe+ArrsR+RK+ e eeL+ +v++L++eN  Lk+e+++ ++++aklk e+
  XP_016486175.1 288 EREMKREKRKQSNRESARRSRLRKQGEAEELAIRVQSLTSENLGLKSEINNFTENSAKLKLEN 350
                     799*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.0E-32193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.1E-19132269No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-14282347No hitNo description
SMARTSM003383.3E-18288352IPR004827Basic-leucine zipper domain
PfamPF001703.0E-19288350IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.967290353IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.88E-9292343No hitNo description
CDDcd147021.35E-16293337No hitNo description
PROSITE patternPS000360295310IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGNSEDGKSC KPEKSSSTAP DQSNIHVYPD WAAMQAYYGP RVAVPPYVNS PVAPGQAPHP  60
CMWGPLQPMM PPYGIPYAGI YAHGGVYAHP GVPIVSRPQA HVMTSSPAVS QTMDAASLSM  120
DPSAKTSGDT NQGLMSKLKG SDGLGMSIGN CSVDNGDGTD HGPSQRFHVS DSGQTEGSSD  180
GSNIHTAEVG EKSKKRSRET TPNTSGDGKS RTRSSPQPRE VNGATKKETS IAFNPGNIAE  240
KVVGTVFSPT MTTTLELRNP VGTLVKASPT NVSRISPAVP GEAWLQNERE MKREKRKQSN  300
RESARRSRLR KQGEAEELAI RVQSLTSENL GLKSEINNFT ENSAKLKLEN SALMERLQNK  360
QRGQAEEVTL GKIGDKRLQP VSTADLLARV NNSGPLDRTN KDDEIHENNT SGAKLHQLLD  420
ASHRTDAVAA R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304310RRSRLRK
2304311RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ486030.0Z48603.1 N.tabacum mRNA for TAF-3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486175.10.0PREDICTED: transcriptional activator TAF-1-like isoform X1
SwissprotQ990891e-139CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A1S4BB650.0A0A1S4BB65_TOBAC; transcriptional activator TAF-1-like isoform X1
STRINGXP_009595056.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-97G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]