PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486112.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CPP

Protein Properties

Length: 322aa MW: 35084.3 Da PI: 7.0311

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	33.9	6.2e-11	2	28	13	39
TCR 13 ClkkYCeCfaagkkCseeCkCedCkNk 39 ClkkYCeC++a++ Cs+ C+Ce+CkN XP_016486112.1 2 CLKKYCECYQANVGCSSGCRCEGCKNV 28 **************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.1E-5	1	31	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	14.942	1	30	IPR005172	CRC domain
Pfam	PF03638	1.2E-7	2	27	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MCLKKYCECY QANVGCSSGC RCEGCKNVYG LKEEYGKDLV KKHCITERLE KPVEEKVEMV 60 TATSGLLQID PRNQCNLTPP TPSFQCSNRG KNASKSWFTS GRYLSSPESG QAIYGLSPAS 120 PTSSKNHDID QETTGDIMDL VTFDQEFNYG NAKLANEFSP GFHVTGNTDD LLALPKSQDL 180 ASNTGGQLIP QTVHFQSTWP LSWRDSPITP MNQFDGSGMN ALELLNSDKK PYAMEDDTPE 240 ILKDSSMPQT GVKVSSPNKK RISPPNRHLN ELGSSSSGGG LKTGRKFILR AVPSFPPLTP 300 CIDSKDVATH SVDNSQKGSS GK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763114.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like
Refseq	XP_016486112.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like
TrEMBL	A0A1S4BB64	0.0	A0A1S4BB64_TOBAC; CRC domain-containing protein TSO1-like
TrEMBL	A0A1U7VL96	0.0	A0A1U7VL96_NICSY; CRC domain-containing protein TSO1-like
STRING	XP_009763114.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6980	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	3e-12	TESMIN/TSO1-like CXC 2