PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486111.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 821aa MW: 89751.4 Da PI: 6.3715

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486111.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	412.4	4.2e-126	443	802	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp ++ + +++ ++a+++f+ +sP++kfsh+ XP_016486111.1 443 LTLLLQCAEAVSADNLEEANKMLLEVSELSTPFGTSAQRVAAYFSEAISARLLNSCLGIYAALPITNVPVLYTQKMASAFQVFNGISPFIKFSHF 537 579****************************************************************999******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 taNqaI ea+++e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g+ s ++le+tg+rL++fAe+lg+pfef + va+++ +l++ XP_016486111.1 538 TANQAIQEAFAREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGN----SMDALEATGKRLSDFAERLGLPFEFLP-VADKVGNLDP 627 *************************************************....***********************.7***** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 e+L+v+++Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE XP_016486111.1 628 EKLNVSKREAVAVHWLQ--HSLYDVTGSDSN----TLSLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVE 715 ************9..999999999999....******************.899****************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ll++ei+nv+a g +r + + +++Wre+l+++GF++++l +aa+qa lll +++s+gy++ e++g+l lgWkd L+++SaWr XP_016486111.1 716 QQLLSKEIRNVLAVGGPSRSGEVK-FNNWREKLQQSGFRSISLAGNAAAQATLLLGMFPSHGYTLVEDNGTLKLGWKDLCLFTASAWR 802 **************888776.************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.341	416	782	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-123	443	802	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence Send to blast
MAKAFPLDCN NCGNTSANVG GSSTYHCKDI NNLQPSPSCE LGNNSKMVRK RAASDMEIQT 60 GAGEENRYLR RPVTIGGSHS QLGDLSACGT SNLRHVSNYS TMQMLPSSTN VCGVTSKGAD 120 FTGFSNSIPN LTNYTDAITS SHHIQQQNLN NNNQSPSVCV FSGLPLFPPD RNRQNGSVQL 180 QQQPATAPAA AAAIRFESME ESATSATSWI DGIIKDLINS SAQVSVPQLI QNVREIIHPC 240 NPYLASLLEY RLRSLTSNNN TNNNSGVSAD VHNDAAVAME FWRRKEGVLP QLASLQQGQN 300 MNPNSLQPHN ILSLPDSSNN HYLNWDIAAP VAPSLNQHQQ ISSNNNPTVT ADLSFVTSPP 360 ILPPQLQQQQ QQQQESSHSQ QQAAVDLEQQ KQQQSSSTSL SPTSATDSGK TKTTTPVVPV 420 NTYREKKEEE RQQKMDEDGL HLLTLLLQCA EAVSADNLEE ANKMLLEVSE LSTPFGTSAQ 480 RVAAYFSEAI SARLLNSCLG IYAALPITNV PVLYTQKMAS AFQVFNGISP FIKFSHFTAN 540 QAIQEAFARE DRVHIIDLDI MQGLQWPGLF HILASRPGGP PFVRLTGLGN SMDALEATGK 600 RLSDFAERLG LPFEFLPVAD KVGNLDPEKL NVSKREAVAV HWLQHSLYDV TGSDSNTLSL 660 LQRLAPKVVT VVEQDLSHAG SFLGRFVEAI HYYSALFDSL GACYGEESEE RHVVEQQLLS 720 KEIRNVLAVG GPSRSGEVKF NNWREKLQQS GFRSISLAGN AAAQATLLLG MFPSHGYTLV 780 EDNGTLKLGW KDLCLFTASA WRPNSFHTSP ALRHFSRPHM D

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence Send to blast

MAKAFPLDCN NCGNTSANVG GSSTYHCKDI NNLQPSPSCE LGNNSKMVRK RAASDMEIQT  60
GAGEENRYLR RPVTIGGSHS QLGDLSACGT SNLRHVSNYS TMQMLPSSTN VCGVTSKGAD  120
FTGFSNSIPN LTNYTDAITS SHHIQQQNLN NNNQSPSVCV FSGLPLFPPD RNRQNGSVQL  180
QQQPATAPAA AAAIRFESME ESATSATSWI DGIIKDLINS SAQVSVPQLI QNVREIIHPC  240
NPYLASLLEY RLRSLTSNNN TNNNSGVSAD VHNDAAVAME FWRRKEGVLP QLASLQQGQN  300
MNPNSLQPHN ILSLPDSSNN HYLNWDIAAP VAPSLNQHQQ ISSNNNPTVT ADLSFVTSPP  360
ILPPQLQQQQ QQQQESSHSQ QQAAVDLEQQ KQQQSSSTSL SPTSATDSGK TKTTTPVVPV  420
NTYREKKEEE RQQKMDEDGL HLLTLLLQCA EAVSADNLEE ANKMLLEVSE LSTPFGTSAQ  480
RVAAYFSEAI SARLLNSCLG IYAALPITNV PVLYTQKMAS AFQVFNGISP FIKFSHFTAN  540
QAIQEAFARE DRVHIIDLDI MQGLQWPGLF HILASRPGGP PFVRLTGLGN SMDALEATGK  600
RLSDFAERLG LPFEFLPVAD KVGNLDPEKL NVSKREAVAV HWLQHSLYDV TGSDSNTLSL  660
LQRLAPKVVT VVEQDLSHAG SFLGRFVEAI HYYSALFDSL GACYGEESEE RHVVEQQLLS  720
KEIRNVLAVG GPSRSGEVKF NNWREKLQQS GFRSISLAGN AAAQATLLLG MFPSHGYTLV  780
EDNGTLKLGW KDLCLFTASA WRPNSFHTSP ALRHFSRPHM D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	426	805	3	382	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486111.1	0.0	PREDICTED: protein SCARECROW-like
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A1S4BBB4	0.0	A0A1S4BBB4_TOBAC; protein SCARECROW-like
STRING	XP_009780114.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8258	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein