PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486087.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 246aa    MW: 29244.1 Da    PI: 10.0648
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.2e-191764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
   XP_016486087.1 17 KGPWTAEEDRLLIQYVNLHGEGRWNSVARFAGLKRNGKSCRLRWVNYL 64
                     79********************************************97 PP
2Myb_DNA-binding491.4e-1570114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+++++++++ +G++ W+tIar ++ gRt++++k++w+++
   XP_016486087.1  70 RGQITPYEEKIILELHAIWGNR-WSTIARGLP-GRTDNEIKNYWRTH 114
                      6788999***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5541268IPR017930Myb domain
SuperFamilySSF466891.83E-3015111IPR009057Homeodomain-like
SMARTSM007173.4E-171666IPR001005SANT/Myb domain
PfamPF002497.5E-181764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-241871IPR009057Homeodomain-like
CDDcd001677.66E-121964No hitNo description
PROSITE profilePS5129419.09269119IPR017930Myb domain
SMARTSM007171.7E-1369117IPR001005SANT/Myb domain
PfamPF002492.4E-1370114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2472120IPR009057Homeodomain-like
CDDcd001671.00E-874115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGEQMGNWRV IEEEWRKGPW TAEEDRLLIQ YVNLHGEGRW NSVARFAGLK RNGKSCRLRW  60
VNYLRPDLKR GQITPYEEKI ILELHAIWGN RWSTIARGLP GRTDNEIKNY WRTHFKKKVK  120
KSSTDKAEKT KARLLKRQQF QQQQQQQQLN NQNDMKRLVS LFEEKENNRV PNLYSQGKQE  180
MAFLYQNTAN QEQGGGFFYS TKASSKYEDI IWDYGLWNLD DFNANLKIGV YYNSLPCMQT  240
LATPFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-27911919128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486087.10.0PREDICTED: myb-related protein MYBAS1-like isoform X1
TrEMBLA0A1S4BB370.0A0A1S4BB37_TOBAC; myb-related protein MYBAS1-like isoform X1
STRINGXP_009604711.11e-163(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.19e-70myb domain protein 305