PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486086.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 196aa    MW: 22054.8 Da    PI: 5.3881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486086.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-191767155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a++++++
  XP_016486086.1 17 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTPEMAARAHDVAALSIKK 67
                    68*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-131767IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-301876IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-201876IPR016177DNA-binding domain
SMARTSM003807.7E-331881IPR001471AP2/ERF domain
PROSITE profilePS5103222.6821875IPR001471AP2/ERF domain
CDDcd000181.50E-291977No hitNo description
PRINTSPR003673.9E-101930IPR001471AP2/ERF domain
PRINTSPR003673.9E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MTKRKTRQSA NTGNRYPVYR GVRMRSWGKW VSEIREPRKK SRIWLGTYPT PEMAARAHDV  60
AALSIKKNSS ILNFPHLVNS LPRPVSLSPR DVQAAAAKAA SMEEPIISSI SSSNSDCTLE  120
TITSASDVEL GEIIELPSLE GSFDSDEPKN EFRLSDSVDG WLYPPWWAPD SEFCEYLLEQ  180
DAFGESLILS NFDRQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-181179776Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009596664.11e-143PREDICTED: dehydration-responsive element-binding protein 3-like
RefseqXP_016486086.11e-143PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD33e-61DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S4BB911e-141A0A1S4BB91_TOBAC; dehydration-responsive element-binding protein 3-like
STRINGXP_009596664.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]