PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486022.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 1685aa    MW: 184554 Da    PI: 6.6123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.6e-09815856346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT eE e+++d  + +G++ +++Ia+ +  ++t  +c+++++k
   XP_016486022.1 815 PWTSEEREIFIDKLATFGKD-FRKIASFLD-HKTTADCIEFYYK 856
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding30.21.1e-0910331073345
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                        WT eE  ++++av  +G++ +  ++r++  +R+++qck ++ 
   XP_016486022.1 1033 DWTDEEKSIFIQAVSAYGKD-FVMVSRCVR-TRSREQCKIFFS 1073
                       5*****************99.*********.********8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.79E-14798859IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-5806857IPR009057Homeodomain-like
PROSITE profilePS5129316.417811862IPR017884SANT domain
SMARTSM007171.8E-9812860IPR001005SANT/Myb domain
PfamPF002491.2E-6814856IPR001005SANT/Myb domain
PROSITE profilePS5129311.7110291080IPR017884SANT domain
SMARTSM007178.2E-910301078IPR001005SANT/Myb domain
SuperFamilySSF466893.28E-1010321083IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-510331074IPR009057Homeodomain-like
PfamPF002494.7E-710331072IPR001005SANT/Myb domain
CDDcd001676.18E-710341072No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1685 aa     Download sequence    Send to blast
MPSEPLPWDR KDFFKERRQH DRSELLRGGP RWREPPPRHH YGSSRWVPAD FRSTRGAPPG  60
HGKQGSWHMY PEESGHGFMP SRSNEKIVED ESCRQSRGDG GGKYGSRSSS RENRSFGGQR  120
DWRRGGGLSW EAAASPSGPV RQHDTATNDQ RPADVVVPHN SEHVNNTWDQ SHSRDQHNKS  180
GSANGTASTG QRFERGNSLG SIEWRPLKWA RSGSLSSRGS LSHSGSSKSM GVDSNETKPE  240
LQPGNSKALQ SPTGDATACV TSAAPSEETS SRKKPRLGWG EGLAKYEKKK VPEDSAAKVG  300
ACISGDSVEP GHPHPLNTAD KSPRVAVSLD CPSPTTPSSV ACSSSPGLED KQPVKATNID  360
QDVGNLCGSP SIISQYHSEE FAFNLENFDL SQISNLNSSI NELLQSEDSS SVDSGFMRST  420
AVNKLLIWKN DISKVLEKTE VEIDSLENEL KTLISEPEYT QLVPSGSCSP RKECNSNSHE  480
DQGTTNIASR PAPLQVVIPE DVIGEEGTNI QEKEHAEVKV EDIDSPGSAT SKFVELPSEK  540
DVAPIGAMKH VGGMLISDDS KSLSNNVKVC SSTEDKAKSR SSDVKVCSFS EDMARDTLAC  600
VESFQLTTRC SRPVSDGSLN CGKDALYNLI LAANKDTAYR AFDVFKNLLP AGKCSFDFSS  660
VSSLQIDHAV KERFARRKQF KQFKEKIIAL KFRVHQHLWK EDMRMLSARK FRAKSQKKFD  720
FSLRPVQIGH QKHRSTVRSR FSTTVGNSSL VPSLEVLNFA SRLLSDLRAK VYRNTLRMPA  780
LVLDQKERAM SRFISKNSLV EDPCAVEKER SVINPWTSEE REIFIDKLAT FGKDFRKIAS  840
FLDHKTTADC IEFYYKNHKS DCFERTKRKP DYSKQAKVCS ANTYLVASSG KRWNREANSV  900
SLDILGAASA IAANVEDSIE IQQKCTSKYS VRMVTEHKTS RHNELERSNS LDVCHSERER  960
VAADVLTGIC GSLSSEAMSS CITSSIDPAE GNQEWKHQKV GSSTRLPLTP EVTQSVDDET  1020
CSDESCGEMD PTDWTDEEKS IFIQAVSAYG KDFVMVSRCV RTRSREQCKI FFSKARKCLG  1080
LDEILPGPGN LVRQDVNGGN DPDACVMETE LFCNEKSSLK LKELSDLCVS AGISKPDMTS  1140
SDDKDGAGEL DSVDTELVSK NSVQVNCHVD KQRVEFNRHC EIQGACTENG LGDENMVTVS  1200
QEGGVQIDGD VSENGPDDIL CANKVSGEHS GEEIKGVVPE HDLKNRKADS AEVSRSNFSL  1260
EDTKSNMVSS GSNSHLAAVR GAELCPLNGS QNMTLLESDS ECKPGVNYSG SNISVQRKKM  1320
PRASNAVYLS ELELENVGDQ QRENATQSAE QPLPSTSQIA HIESRQILGS YSLGESATKE  1380
SGDGCSTSAA LQEIQKVGKN LRSDTTGFFL QRCNGTNREQ TVGGSSSNVD KPCRNGDVKL  1440
FGQILSKPCP QANTSSNAQQ SDSSNQQLKV CSNMSSASHS LDGNSATAKF ERNNFLGSEN  1500
HQVRSFGFWD GNRIQTGFSS LPDSAILLAK YPAAFGNYAI SSSKVEQQPP LHGVVKTATD  1560
RSLNGVPVFP TRDVSSNNGV AAADYQVYRS LDVQPFTIEM KQRQDAVFSE MQRRNGFDVV  1620
SSMQQQARGV VVGRGGILVG GQCTGVSDPV AAIKMHYAKA EQFSGQATSI IREDDYWLSK  1680
GDISR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C5e-14773864494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D5e-14773864494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803598.10.0PREDICTED: uncharacterized protein LOC104248943
RefseqXP_016486022.10.0PREDICTED: uncharacterized protein LOC107806392
TrEMBLA0A1S4BAX10.0A0A1S4BAX1_TOBAC; uncharacterized protein LOC107806392
TrEMBLA0A1U7YKF20.0A0A1U7YKF2_NICSY; uncharacterized protein LOC104248943
STRINGXP_009803598.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59042332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-156MYB family protein