PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016485761.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 203aa MW: 23413.5 Da PI: 8.4761 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 21 | 74 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + +++++q+++Lee F +++++ e++++LAk+lg++ rq+ +W+qN+Ra++k+ XP_016485761.1 21 KKRLNQDQVKRLEESFDSTKKLEPEQKTQLAKELGVPPRQIAIWYQNKRARWKN 74 56799***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 105.7 | 3.6e-34 | 20 | 111 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++qvk LEesF++++kLepe+K++la+eLg+ prq+a+W+qn+RAR+k++ l dy+aL++++d+ +e++++eke+e+Lr elk+ XP_016485761.1 20 NKKRLNQDQVKRLEESFDSTKKLEPEQKTQLAKELGVPPRQIAIWYQNKRARWKNQSLGLDYNALQHKLDTALAEKRKIEKENERLRVELKK 111 79*************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.37 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-14 | 18 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.73E-13 | 21 | 76 | No hit | No description |
Pfam | PF00046 | 7.0E-16 | 21 | 74 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.31E-16 | 21 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-19 | 22 | 80 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.5E-5 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.5E-5 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MNNFLNSQYL HKHQSILNHN KKRLNQDQVK RLEESFDSTK KLEPEQKTQL AKELGVPPRQ 60 IAIWYQNKRA RWKNQSLGLD YNALQHKLDT ALAEKRKIEK ENERLRVELK KVNEMLVACK 120 KAQGHEETQG LIPLIAANSI SSGCEEVVVS SSFQEDVSCS LVKNNSESNL QFDELYACLM 180 GGEEGSNCRL SWQNGKDLWV WKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016485761.1 | 1e-148 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A1S4BA25 | 1e-147 | A0A1S4BA25_TOBAC; homeobox-leucine zipper protein ATHB-52-like | ||||
STRING | XP_009608121.1 | 1e-142 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-28 | homeobox protein 52 |