PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016485727.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 311aa MW: 33896.2 Da PI: 8.5676

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016485727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.9	5.9e-40	40	101	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkksss XP_016485727.1 40 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNIPVGGGSRKNKKSSS 101 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-27	28	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.5E-34	41	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.161	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDTVQWPQEI MVKPMEEIIQ NTNGSSKPNS CVERKVRPQK DQALNCPRCN STNTKFCYYN 60 NYSLSQPRYF CKTCRRYWTA GGSLRNIPVG GGSRKNKKSS SNSSSYSNHV NNPLKKLPDL 120 INPPSHNHDQ NPSKIHIEGS QDLNLGFSSD FKTITELIQV PNYDASNKDN NSPSISPLPP 180 PPSSSSSASS SSQLSALELI NGITSRGMNN NSFMSMANIS DPNSVYNNSS GFSLPSLNFS 240 LDHGLGNAAY GNNLQETNTS GRFLFPFVGL KQISTTNTTN DGANENNRDH HQPAGESTNG 300 FWNGMLGGGG S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	4e-73	HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBank	HG975520	4e-73	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016485727.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like, partial
TrEMBL	A0A1S4BA47	0.0	A0A1S4BA47_TOBAC; dof zinc finger protein DOF4.6-like
STRING	XP_009617120.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	1e-45	Dof family protein