PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016485723.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YC | ||||||||
Protein Properties | Length: 121aa MW: 13281.4 Da PI: 8.748 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 107.9 | 5.9e-34 | 20 | 102 | 18 | 99 |
NF-YC 18 nhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k + +dvkmis eaP+++skacelfi +lt r+w+ + + krrtl+k d+a+av td+fdflv+ v ++ XP_016485723.1 20 PHSLPLARIKKIMKkSSDDVKMISGEAPIIFSKACELFIEKLTKRAWIITMQGKRRTLHKEDVASAVIATDVFDFLVNLVTES 102 599**********825689***********************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.9E-31 | 16 | 86 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.04E-26 | 17 | 95 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-22 | 22 | 86 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MRQAGAYSGI LSGGISKTGP HSLPLARIKK IMKKSSDDVK MISGEAPIIF SKACELFIEK 60 LTKRAWIITM QGKRRTLHKE DVASAVIATD VFDFLVNLVT ESNVADNKCE VNEDSQVIVE 120 T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-31 | 21 | 99 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628926.1 | 5e-85 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_016485723.1 | 5e-85 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 5e-31 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q9ZVL3 | 7e-31 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A1S4BA97 | 1e-83 | A0A1S4BA97_TOBAC; nuclear transcription factor Y subunit C-2-like | ||||
STRING | XP_009628926.1 | 2e-84 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12881 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-33 | nuclear factor Y, subunit C2 |