PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485416.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 544aa    MW: 60808.1 Da    PI: 6.607
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.23.4e-1381745441374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+a s+gdl  aq+l+++l++++s +g+p+qRl ay++e+L arla s+s++yk+ +++e +   s e l+++++++ev+P++kf++
  XP_016485416.1 174 LKHVLIACAKAESDGDLLTAQWLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSIYKSQRCKEPA---SFELLSYMHILHEVCPYFKFGY 265
                     689******************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+rvHiiDf+isqG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfef++ +a +++d
  XP_016485416.1 266 MSANGAIAEAMKDEQRVHIIDFQISQGSQWVTLIQAFAARPGGPPHIRITGIDDSKSAyaRGGGLNIIGKRLSKLAESFKVPFEFHA-AAISTSD 359
                     ******************************************************888899999************************.8999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L ++pgEalaVn+++ lh+++desvs+e++rd++++lvksl+Pkvv++veqe+++n++ F+ rfle l+yy+a+f+s++a+l+r+++eri
  XP_016485416.1 360 VQLENLGIRPGEALAVNFAFVLHHMPDESVSTENHRDRLIRLVKSLNPKVVTLVEQESNTNTAAFFPRFLEMLDYYTAMFESIDATLSRAHKERI 454
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+++ivn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+l++++ +  yr+ee++g+l+lgW++r Lv+ +aW+
  XP_016485416.1 455 NVEQHCLAKDIVNIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSLVNSTIKALVENYCD-KYRLEERDGALYLGWMNRDLVASCAWK 544
                     *************************************************************95.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.104148525IPR005202Transcription factor GRAS
PfamPF035141.2E-135174544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MQASQRLRRS AMSDTLYKSV QKTEASYLPQ FQTLDKQMTN INRTQGGNHS IQTYSDWYCT  60
LESSSPTGKY AVQNSISAVS FTPNGSPISH QESQSCLSDV HYLPDTNYNS PVSGSCITDD  120
VNDFRHKLKE LETVMLGPNS DVLDSCDNSL PSCMTSPEIG CWRQMLEAIP RGDLKHVLIA  180
CAKAESDGDL LTAQWLISEL RQMVSVSGEP IQRLGAYILE GLVARLAASG SSIYKSQRCK  240
EPASFELLSY MHILHEVCPY FKFGYMSANG AIAEAMKDEQ RVHIIDFQIS QGSQWVTLIQ  300
AFAARPGGPP HIRITGIDDS KSAYARGGGL NIIGKRLSKL AESFKVPFEF HAAAISTSDV  360
QLENLGIRPG EALAVNFAFV LHHMPDESVS TENHRDRLIR LVKSLNPKVV TLVEQESNTN  420
TAAFFPRFLE MLDYYTAMFE SIDATLSRAH KERINVEQHC LAKDIVNIIA CEGIERVERH  480
ELLGKWKSRF RMAGFSPYPL SSLVNSTIKA LVENYCDKYR LEERDGALYL GWMNRDLVAS  540
CAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6018154326378Protein SCARECROW
5b3h_A2e-6018154325377Protein SCARECROW
5b3h_D2e-6018154325377Protein SCARECROW
5hyz_A1e-601785448375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485416.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_016485418.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X2
RefseqXP_016485419.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_016485420.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_016485421.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X3
RefseqXP_016485422.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1S4B9470.0A0A1S4B947_TOBAC; scarecrow-like transcription factor PAT1 isoform X1
STRINGXP_009590821.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]