PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016485357.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 314aa MW: 35688.7 Da PI: 7.5987 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.7e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++ + ++G+g +W + +++ g++R++k+c++rw++yl XP_016485357.1 14 RGPWSPEEDAKLKEFIDKYGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.3 | 1.3e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd + + + G++ W+ Ia+ ++ gRt++++k++w++ XP_016485357.1 69 GDFSDEEDRVICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 679******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.119 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.9E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.82E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.278 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 7.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-7 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKEFID KYGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGD FSDEEDRVIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKVMGL 120 KSPFFPPTQT QTFSSLFRDS YYTTTRSLTG GLEHISSAQP NLIMCTSNNM NFNFELGTNQ 180 YSYFQPCQDQ SLMNPMQATC SSSDGSCNQM SYGKDIKQEE MGSCLQSHIP TTFEETTQKF 240 TLDYGNNIGR GNDHQLGTWA DQKSNGYQSS QFQYYDIEEV KELISSSSSG NGCNNNSFFF 300 YNDENKTNER GMHY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 7e-41 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 7e-41 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779682.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
Refseq | XP_016485357.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A1S4B939 | 0.0 | A0A1S4B939_TOBAC; transcription factor RAX2-like | ||||
TrEMBL | A0A1U7WIB2 | 0.0 | A0A1U7WIB2_NICSY; transcription factor RAX2-like | ||||
STRING | XP_009779682.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-79 | myb domain protein 36 |