PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016485356.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 414aa MW: 45369.6 Da PI: 7.5418 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.1 | 5.5e-12 | 342 | 387 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k + a++L +Av+YIk+Lq XP_016485356.1 342 SIAERMRRTRISERMKKLQDLFPNM----DKQTNTADMLDLAVDYIKDLQ 387 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.57 | 336 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-16 | 339 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.17E-12 | 340 | 391 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.7E-15 | 341 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-13 | 342 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-9 | 342 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MFSSTVPISI EMDKFNSFLF ASGGGGSSNF KNGGELQGME NEFLRNKEIM SSDYFQQQSS 60 QIHQQQSNNN GGGLTRYRSA PSSFFAGILD GDGNNSGDNF ITHDGSSSSD SESMFTALLN 120 NNNDNNNNNN NNNNNNVTVS GTRDLNDQIS KNQLQFASSS SSSMKQEIGE EIKFASSAMG 180 SYGVGVQMQS GVRLSNVNGG GSNNLMRQSS SPAGFFNGFD ITREVGNYRA SSGANMSFSS 240 AQSSTSNFMP SIAENESWND SSFHSLKRNR DGDLKVFSND FNGITSPNGE SRNYTTSGLT 300 HHLSLPKTSS EMAAIEKYLQ FQQDSVPCKI RAKRGCATHP RSIAERMRRT RISERMKKLQ 360 DLFPNMDKQT NTADMLDLAV DYIKDLQKQV QTLTDKKAKC SCPSKQLQYS NGTT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF327439 | 1e-70 | JF327439.1 Nicotiana attenuata clone NA541 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016485356.1 | 0.0 | PREDICTED: transcription factor bHLH130-like | ||||
TrEMBL | A0A1S4B8Y6 | 0.0 | A0A1S4B8Y6_TOBAC; transcription factor bHLH130-like | ||||
STRING | XP_009757642.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4435 | 22 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-59 | bHLH family protein |