PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485029.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 283aa    MW: 31381.6 Da    PI: 8.9144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++ +G g+W++ +   g+ R++k+c++rw +yl
   XP_016485029.1 14 KGAWTKEEDQRLINYIRSHGEGCWRSLPTAAGLQRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding591.1e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEdel+++++ +lG++ W+ Ia +++ gRt++++k++w+++
   XP_016485029.1  67 RGNFTEEEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.398961IPR017930Myb domain
SuperFamilySSF466897.4E-3013108IPR009057Homeodomain-like
SMARTSM007172.2E-121363IPR001005SANT/Myb domain
PfamPF002493.0E-151461IPR001005SANT/Myb domain
CDDcd001674.61E-101661No hitNo description
PROSITE profilePS5129428.49962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2865117IPR009057Homeodomain-like
SMARTSM007177.9E-1866114IPR001005SANT/Myb domain
PfamPF002496.6E-1767111IPR001005SANT/Myb domain
CDDcd001679.42E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR SHGEGCWRSL PTAAGLQRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISRG  120
IDPQSHRPLN AAATTTTASA ATTTTKNICM DFKNNVDQKP NIINQRNNTT DSSYDETKCN  180
SGTTEETKPL EIPQKSSQQL MINLELSIGL PLHTKTDHIS SAESTASYNF LAAVAPPQTA  240
AVPVTAAAEM VAKTVCLCWQ IGFQGGGQSC GKCKTATGFY RYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30141167108B-MYB
1h8a_C5e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00053PBMTransfer from AT1G22640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485029.10.0PREDICTED: myb-related protein 330-like
SwissprotP813951e-108MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A1S4B8310.0A0A1S4B831_TOBAC; myb-related protein 330-like
STRINGXP_009600359.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-90myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]