PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016484862.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 337aa MW: 37272.7 Da PI: 9.604

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016484862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.6e-13	265	310	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq XP_016484862.1 265 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 310 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.269	259	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-16	261	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.91E-12	263	312	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-14	264	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-9	265	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-13	265	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MESEYANSNM RNSSTTSGLL RFSSAPTSFL ANFSDKVVKN GNYKNGLGSK LNLGSSLGLN 60 NSQLPPPYPR QNSMDKGYKV VSSMEMDHQR QNKLGSNLMR QNSSPAGLFS HLNSQNGCGV 120 GGYRRVNGGN GDTVSPSSLG MLSRTNEVEN ESSSITTSLD DDKSGNGNSE TQYYNSGLPF 180 ASWSEASHFQ ESFTGHKREM LDSEEKLFAN SQIGQLGNQP PILSHHLSLP KTPAEIAAME 240 KLFQLQETVP CKVRAKRGFA THPRSIAERV RRTRISERMR KLQELVPNMD KQTNTADMLD 300 LAVDYIKDLQ KQYKTLTDCR ANCKCAAMQK PVSNQRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016484862.1	0.0	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	2e-78	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A1S4B7N8	0.0	A0A1S4B7N8_TOBAC; transcription factor bHLH130-like
STRING	XP_009768432.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-72	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]