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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016484800.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | G2-like | ||||||||
| Protein Properties | Length: 330aa MW: 37395.2 Da PI: 9.2115 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 96.8 | 1.6e-30 | 61 | 114 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
rlrWt++LH rFv+ave+LGG+e+AtPk +l+ m++kgL ++hvkSHLQ+YR+
XP_016484800.1 61 VRLRWTTDLHLRFVQAVEKLGGQERATPKLVLQSMNIKGLNIAHVKSHLQMYRS 114
59***************************************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 6.7E-28 | 57 | 115 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 12.61 | 57 | 117 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 2.51E-13 | 62 | 115 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.9E-22 | 62 | 116 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.1E-8 | 62 | 113 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 330 aa Download sequence Send to blast |
MEDSDDTVCS KTSPNYSEKN EDEGDNISIK LPKDGGSSSN STVEEGEKKL HVRPYVRSKM 60 VRLRWTTDLH LRFVQAVEKL GGQERATPKL VLQSMNIKGL NIAHVKSHLQ MYRSKKIDDL 120 TQGIANYRPF MEGGDPNIYN MSELPVLPTF IQRFNSTFRY GDASRNCPQS TIDMNVRPEF 180 YTKLSERIFG SNNSRAIHQD SITGIPSFIS ERSTWRTNEM KDEMGLFREQ KYGQGLFRKS 240 PIDKLIPLFQ RAAKAKARLS LLKRKAIDCD LIDLNLSLGV KQKNNSHDDN DDDDGSTLSL 300 SMASSRLKEE ANYATKENAR RGASTLDLTL |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 2e-16 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 2e-16 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 1e-16 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 1e-16 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 1e-16 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 1e-16 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 2e-16 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 2e-16 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 2e-16 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 2e-16 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 2e-16 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 2e-16 | 62 | 116 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC240197 | 8e-47 | AC240197.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-208l2 map 10, complete sequence. | |||
| GenBank | HG975522 | 8e-47 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009767509.1 | 0.0 | PREDICTED: two-component response regulator ARR18-like | ||||
| Refseq | XP_016484800.1 | 0.0 | PREDICTED: two-component response regulator ARR18-like | ||||
| TrEMBL | A0A1S4B775 | 0.0 | A0A1S4B775_TOBAC; two-component response regulator ARR18-like | ||||
| TrEMBL | A0A1U7VYP9 | 0.0 | A0A1U7VYP9_NICSY; two-component response regulator ARR18-like | ||||
| STRING | XP_009767509.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA4382 | 21 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G38300.1 | 8e-53 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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