PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016484530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 353aa MW: 39490.2 Da PI: 8.6892 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.3 | 1.4e-53 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ XP_016484530.1 16 LPPGFRFHPTDEELVVHYLKKKAASIPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTA 109 79****************************.88***************988899***************************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl XP_016484530.1 110 gGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 143 77788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-65 | 9 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.069 | 16 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MESTDSSSGS HQQPQLPPGF RFHPTDEELV VHYLKKKAAS IPLPVAIIAE VDLYKFDPWE 60 LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLTAG GTQKVGVKKA 120 LVFYGGKPPK GVKTNWIMHE YRLADNKANN KPPGCDVANK KSLRLDDWVL CRIYKKNNTQ 180 RPIDHERDDL NDIMGSSIPA TCIPNNSMSI FGQPKANSNY TTLLETHDQN IYDQGMQFSS 240 KSSSQLPVNV LSTSPSLLPS KRSLNGLYWN EEAAANDNSQ STKRFLTENI NNMDDGLSMN 300 VRSDHEQNGS IASLLSQLPQ TPSLQQQQQQ QILQGSLSDG VFRQPYSGMN WYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-75 | 16 | 178 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00361 | DAP | Transfer from AT3G15510 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769986.1 | 0.0 | PREDICTED: NAC transcription factor 25 | ||||
Refseq | XP_016484530.1 | 0.0 | PREDICTED: NAC transcription factor 56-like | ||||
Swissprot | Q9LD44 | 1e-115 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A1S4B6F4 | 0.0 | A0A1S4B6F4_TOBAC; NAC transcription factor 56-like | ||||
TrEMBL | A0A1U7VYE5 | 0.0 | A0A1U7VYE5_NICSY; NAC transcription factor 25 | ||||
STRING | XP_009769986.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-111 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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