PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016484484.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 451aa MW: 50771 Da PI: 9.8761

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016484484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	25.4	3e-08	348	435	12	99
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrt.lkksdiaaavtrtdifdflvdivprd 99 ++++ + +++P ri++i+k ++ ++s ea ++ ka e f le+ r + +r+ + ++++v++ + fdfl + vp++ XP_016484484.1 348 EKSESALNQFPHNRIHRIIKDENSDMRMSQEATFVVNKATEKF-LEVFCREAYACSFLDRNNyVGYDHLSSVVSKRHRFDFLSEFVPQK 435 445566789*********99988889**********9.68888877777766666516677799**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.74E-15	337	434	IPR009072	Histone-fold
Pfam	PF00808	1.0E-9	356	419	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.8E-17	357	434	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MPKTKRSNGK SDKNDGDEPE IFVVPSSSTE SQQDEKEEEE ENDGVENVQE EYVRDTDEEE 60 EEEKAAEGKA GNNTNRRGRD EKLEVQKKVY RRKGKKGDEN RENEAKKSKQ SESENLKIYM 120 RKKKVKNGKE KEEEEQNVAK TAKREKDNTE KKMKEKNEKG RIGKNAKSNG DSTRGCKIEN 180 KKKKNEEEGG QKVAKKAKSN GDSSCGGKNE NKKKKREEEG GQKVAKKAKS NGGRGGGGGG 240 GGGGGKATKK AKSNGDSSRS KKEEKKMKKT ENKKEGNEEA EEKGVKRAQS NGSTSRATKE 300 KMKREKEENE GKASNGKVEN GARCNGDTPL KKLKAKKKRE DDEEEEHEKS ESALNQFPHN 360 RIHRIIKDEN SDMRMSQEAT FVVNKATEKF LEVFCREAYA CSFLDRNNYV GYDHLSSVVS 420 KRHRFDFLSE FVPQKVRAVD ALAEIPKAEE T

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MPKTKRSNGK SDKNDGDEPE IFVVPSSSTE SQQDEKEEEE ENDGVENVQE EYVRDTDEEE  60
EEEKAAEGKA GNNTNRRGRD EKLEVQKKVY RRKGKKGDEN RENEAKKSKQ SESENLKIYM  120
RKKKVKNGKE KEEEEQNVAK TAKREKDNTE KKMKEKNEKG RIGKNAKSNG DSTRGCKIEN  180
KKKKNEEEGG QKVAKKAKSN GDSSCGGKNE NKKKKREEEG GQKVAKKAKS NGGRGGGGGG  240
GGGGGKATKK AKSNGDSSRS KKEEKKMKKT ENKKEGNEEA EEKGVKRAQS NGSTSRATKE  300
KMKREKEENE GKASNGKVEN GARCNGDTPL KKLKAKKKRE DDEEEEHEKS ESALNQFPHN  360
RIHRIIKDEN SDMRMSQEAT FVVNKATEKF LEVFCREAYA CSFLDRNNYV GYDHLSSVVS  420
KRHRFDFLSE FVPQKVRAVD ALAEIPKAEE T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	239	GGRGGGGGG
2	233	245	RGGGGGGGGGGGK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016484484.1	0.0	PREDICTED: ABC transporter F family member 4-like
TrEMBL	A0A1S4B6J2	0.0	A0A1S4B6J2_TOBAC; ABC transporter F family member 4-like
STRING	XP_009598519.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9304	14	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-24	nuclear factor Y, subunit C10