PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016484450.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 487aa MW: 53988.8 Da PI: 5.518

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016484450.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.8	8.7e-37	140	199	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+st+tkfCyynn +++qPr+fC++C+ryWt+GG++rn+PvG+grrknk+ XP_016484450.1 140 PDKILPCPRCNSTDTKFCYYNNNNVNQPRHFCRSCQRYWTAGGTMRNLPVGAGRRKNKNL 199 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	137	197	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-31	142	198	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.922	144	198	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	146	182	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MTCESEIKLF GKILPMVVSG ESTGAGRSRI DNRISTGFDV DQYLEDNRTS SSENDEGSES 60 IDYENQTADK DNISGELSKD KLEEEDQNQM MEISEDPKIS SESDYSPKSP TDEDPQTVKS 120 AENENEPNNA TDSQQTLKKP DKILPCPRCN STDTKFCYYN NNNVNQPRHF CRSCQRYWTA 180 GGTMRNLPVG AGRRKNKNLA SHYRHISIPD DVLLAAQIES PNGFHHPMYK PNGTVLSFGP 240 ELPLCESMAS ALNPAEKRAP NVIPNGFYKQ EHRNSSCKGG ENGDDCSKGS SIKTSNMMVE 300 GGNSKPHEAV MRNINGFLSP APCFHGVPFP FPWNAAVPMS AIYPFGFPMP FYPAPYWNCS 360 VPRWSNPWLS QPCRTENEKA SGSDPNSPLG KHSREGDDPE GNEPVEQKSS KRSILVPKTL 420 RIDDPDEAAK SSIWSTLGIK YDSASRGGFF KALQPKIDDR DHKDNTSPVL HANPAALSRS 480 LVLQERT

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MTCESEIKLF GKILPMVVSG ESTGAGRSRI DNRISTGFDV DQYLEDNRTS SSENDEGSES  60
IDYENQTADK DNISGELSKD KLEEEDQNQM MEISEDPKIS SESDYSPKSP TDEDPQTVKS  120
AENENEPNNA TDSQQTLKKP DKILPCPRCN STDTKFCYYN NNNVNQPRHF CRSCQRYWTA  180
GGTMRNLPVG AGRRKNKNLA SHYRHISIPD DVLLAAQIES PNGFHHPMYK PNGTVLSFGP  240
ELPLCESMAS ALNPAEKRAP NVIPNGFYKQ EHRNSSCKGG ENGDDCSKGS SIKTSNMMVE  300
GGNSKPHEAV MRNINGFLSP APCFHGVPFP FPWNAAVPMS AIYPFGFPMP FYPAPYWNCS  360
VPRWSNPWLS QPCRTENEKA SGSDPNSPLG KHSREGDDPE GNEPVEQKSS KRSILVPKTL  420
RIDDPDEAAK SSIWSTLGIK YDSASRGGFF KALQPKIDDR DHKDNTSPVL HANPAALSRS  480
LVLQERT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761438.1	0.0	PREDICTED: cyclic dof factor 3-like
Refseq	XP_016484450.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A1S4B676	0.0	A0A1S4B676_TOBAC; cyclic dof factor 3-like
TrEMBL	A0A1U7V4X6	0.0	A0A1U7V4X6_NICSY; cyclic dof factor 3-like
STRING	XP_009761438.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-85	cycling DOF factor 3