PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016484397.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 199aa MW: 22358.1 Da PI: 9.1816 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.6 | 2.7e-13 | 1 | 50 | 10 | 59 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 + +NRe+ArrsR+RK+a + eLe+ v + eN++L k+ +++++ + XP_016484397.1 1 MLSNRESARRSRRRKQAHLTELETQVSQVRVENSSLLKRFTDISQKYNEA 50 579**********************************9999999888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.8E-9 | 1 | 48 | No hit | No description |
Pfam | PF00170 | 1.9E-10 | 1 | 47 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.8E-8 | 1 | 56 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.519 | 1 | 49 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.23E-10 | 1 | 46 | No hit | No description |
Pfam | PF12498 | 2.0E-43 | 63 | 188 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MLSNRESARR SRRRKQAHLT ELETQVSQVR VENSSLLKRF TDISQKYNEA AVDNRVLKAD 60 VETLRAKVKM AEETVKRVTG LNPLFQAMSE ISTMMMPSFT GSPFDSSADA AVPEQDDPRH 120 HYYQAPENSH MPNHTPRMQN GMIDIPSMEN AHQSSAAEAI GGDKIGRTSS MQRVASLEHL 180 QKRVRGEAST CGTQCRKEQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 15 | RRSRRRKQ |
2 | 10 | 15 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009797322.1 | 1e-147 | PREDICTED: light-inducible protein CPRF2-like, partial | ||||
Refseq | XP_016484397.1 | 1e-148 | PREDICTED: light-inducible protein CPRF2-like | ||||
Swissprot | Q99090 | 6e-81 | CPRF2_PETCR; Light-inducible protein CPRF2 | ||||
TrEMBL | A0A1S4B6C5 | 1e-147 | A0A1S4B6C5_TOBAC; light-inducible protein CPRF2-like | ||||
TrEMBL | A0A1U7XZB4 | 1e-145 | A0A1U7XZB4_NICSY; light-inducible protein CPRF2-like | ||||
STRING | XP_009797322.1 | 1e-146 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2934 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.1 | 3e-44 | bZIP family protein |
Publications ? help Back to Top | |||
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