PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484163.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 502aa    MW: 55620.8 Da    PI: 4.4109
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17.5e-161452745
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    snr   +s+R++g+lKKA+ELSvLCd+++ + +fs+ gk
  XP_016484163.1 14 SNRIGVYSRRKKGLLKKANELSVLCDIDIFLAMFSPGGK 52
                    788889******************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-17159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.311160IPR002100Transcription factor, MADS-box
CDDcd002661.62E-17283No hitNo description
SuperFamilySSF554553.66E-20393IPR002100Transcription factor, MADS-box
PfamPF003192.6E-141456IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-82237IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-83758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MGRAKLKLHK LDGSNRIGVY SRRKKGLLKK ANELSVLCDI DIFLAMFSPG GKPSVYKSDN  60
SSFEDVITKF AEVNPEERAK RKMECLDTIK KACKKSDHDV DIGQQLCPGD LTTEDINFLT  120
HSLRIRLSDI EGRVRLWKNL EKIDSIQQLR KMEDSISKSL NEIAKHKCGM ASLIFGAGKD  180
FQPSSVRHGI DSPLNSDARK ELHPCSSVHA CDSENIDVYE DMNSFDSFLL CDTGQDFQAS  240
SLMQHGMNLG QELYQCSSVH GENMDVYEDL NSFPLEYLEE QSFSFESYTN LVCNKEIEVS  300
MPESVNFVPG EIFLDCEVNQ EDIVTEFGFT FDVPQLEQMD DKGNAFDCSI NKGSRLPHSD  360
LVNIHDSSKS ASGTCENMIL ADSLHFLYGM DSSSSDAGEE FSTSSSIKHG INLSSTQLDA  420
GLSVNGGDSE NMDDYEDLIA FVSCLKFDDE HGFQSSPSIG QYSMNSPVSF DAGQELHRSS  480
SVNGGDSESI NGYGDLNLFV QG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1837210.0AY183721.1 Nicotiana tabacum MADS box protein (Mads1;11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484163.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
TrEMBLA0A1S4B5U10.0A0A1S4B5U1_TOBAC; agamous-like MADS-box protein AGL30 isoform X2
STRINGXP_009770375.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.24e-48AGAMOUS-like 30