PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483921.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 406aa    MW: 44226.6 Da    PI: 6.6783
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-18220274256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_016483921.1 220 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 274
                     778899***********************************************98 PP
2HD-ZIP_I/II127.36.5e-41220309191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  XP_016483921.1 220 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-AL 309
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-17201274IPR009057Homeodomain-like
SuperFamilySSF466891.07E-18211277IPR009057Homeodomain-like
PROSITE profilePS5007117.167216276IPR001356Homeobox domain
SMARTSM003895.1E-16218280IPR001356Homeobox domain
PfamPF000462.1E-15220274IPR001356Homeobox domain
CDDcd000862.35E-15220277No hitNo description
PROSITE patternPS000270251274IPR017970Homeobox, conserved site
PfamPF021836.8E-11276310IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-25276319IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MELGLSLGDT NTNTTTATAA AASSKSFFLS KNIKTSSSDQ NHSKKKRKGL GFCMALGINS  60
SNGKVQEQHD DDDDEENPEK SHDDEDDEGD EHTSEEGNIN GNTPVQLDLL PLAPVPRRSF  120
PQSLHWSSDN GSSENGSSGN GGLPAARGFD VNRVPAAGTE EVSSPNSIAS SFRMDFGLFR  180
SANIIGNKRN SDSGGGNDGG EPERASSRAS DEDENGVNTR KKLRLSKEQS AYLEESFKEH  240
HTLNPKQKLA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTEENRRLH  300
KELQELRALK SSNPFYMQLP ATTLTMCPSC ERVATTTSAT AAPPTTAAGT TTPKAPTPIP  360
TTTITTTTTT SDSIPKAIPF LNSRPRFFPF NTTTNSPNHP HQSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218224TRKKLRL
2268276RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-91HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483921.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotP466651e-91HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S4B4Z50.0A0A1S4B4Z5_TOBAC; homeobox-leucine zipper protein HOX11-like
STRINGXP_009767401.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-68homeobox from Arabidopsis thaliana