PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016483897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 277aa MW: 31321 Da PI: 5.51 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.2e-20 | 127 | 177 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka+++a+ kl+g XP_016483897.1 127 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAIEAAKAYDRAAFKLRG 177 8********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 126 | 186 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.19E-32 | 126 | 185 | No hit | No description |
PROSITE profile | PS51032 | 24.131 | 127 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-23 | 127 | 187 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-37 | 127 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-15 | 127 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 128 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 151 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MASPQENCTL DLIRQHLFDD DAFMECYCSE PTTLDSQNSS SSESLDQSFS FEPTLNYADT 60 AQSSSFEISS FFDNSKTEFD CFELETIQKQ SLNSRKQTSF KERKPSLNIA IPVKLQKVEV 120 VPSEKKHYRG VRQRPWGKFA AEIRDPNRKG TRVWLGTFDT AIEAAKAYDR AAFKLRGSKA 180 IVNFPLEVAN FKQEYNNEIP QSANSGRKRV RGTENEEQLV INKEMKREEE RVPTAAAPLT 240 PSSWSAIWDS GDGKGIFEVP PLSPLSPHIG YSQVVMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-31 | 126 | 188 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 211 | GRKRVRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016266 | 0.0 | AB016266.1 Nicotiana sylvestris nserf4 gene for ethylene-responsive element binding factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016483897.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
Swissprot | Q9LW48 | 1e-146 | ERF5_NICSY; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A1S4B4P1 | 0.0 | A0A1S4B4P1_TOBAC; ethylene-responsive transcription factor 5-like | ||||
STRING | XP_009609460.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 8e-64 | ERF family protein |