PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483648.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 399aa    MW: 45069.4 Da    PI: 8.6879
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.71.9e-31231285155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt+ LH+rFv++v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  XP_016483648.1 231 KTRIRWTQHLHDRFVQCVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRS 285
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-28229286IPR009057Homeodomain-like
SuperFamilySSF466891.56E-16230285IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23231286IPR006447Myb domain, plants
PfamPF002492.7E-7235284IPR001005SANT/Myb domain
PfamPF143799.0E-21313360IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSIQRAEQTH AYQKYEFASD YSLEFPQNID QLKSTSCLEF CFQPGTSAEN CCQQQQQISW  60
PNTDSSSRTI ITRIGSPPSA FFATERYMGL TQYEYQDNSS QLSKNNDPQL PSYPQQCQNG  120
FLARADKDFP KISMPSFVRS QFSSSQLLGA YENPFSNLSE KERIVLLKSK FLKEFDSSNK  180
QPSMPVHGNQ DYGLSNNVCG FNLVHARQQS GSPSANNVNN SGCSGGSLSN KTRIRWTQHL  240
HDRFVQCVNR LGGADKATPK AILKLMDSEG LTIFHVKSHL QKYRSAKYIP ESAEGKSGKT  300
DSANVQMNSK TGMQIKEALN MQLEVQRRLH EQLEIQRKLQ MRIEEQGEQL KKMFDQQQKT  360
TRSLLETRNS SISSPVADSF DNTIFSSKIS YNDMATASI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-22231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-22231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-22231288158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-22231288158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-22231288158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-22231288158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-22231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-22231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-22231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-22231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-22231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-22231288259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483648.10.0PREDICTED: uncharacterized protein LOC107804295 isoform X2
TrEMBLA0A1S4B4E00.0A0A1S4B4E0_TOBAC; uncharacterized protein LOC107804295 isoform X2
STRINGXP_009623150.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.19e-65G2-like family protein