PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483647.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 400aa    MW: 45197.5 Da    PI: 8.6879
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.71.9e-31232286155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt+ LH+rFv++v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  XP_016483647.1 232 KTRIRWTQHLHDRFVQCVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRS 286
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-28230287IPR009057Homeodomain-like
SuperFamilySSF466891.56E-16231286IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23232287IPR006447Myb domain, plants
PfamPF002492.7E-7236285IPR001005SANT/Myb domain
PfamPF143799.0E-21314361IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MSIQRAEQTH AYQKYEFASD YSLEFPQNID QLKSTSCLEF CFQPGTSAEN CCQQQQQISW  60
PNTDSSSRTI ITRIGSPPSA FFATERYMGL TQYEYQDNSS QLSKNNDPQL PSYPQQCQNG  120
FLARADKDFP KISMPSFVRS QFSSSQLLGA YENPFSNLSE KERIVLLKSK FLKEFDSSNK  180
QPSMPVHGNQ DYGQLSNNVC GFNLVHARQQ SGSPSANNVN NSGCSGGSLS NKTRIRWTQH  240
LHDRFVQCVN RLGGADKATP KAILKLMDSE GLTIFHVKSH LQKYRSAKYI PESAEGKSGK  300
TDSANVQMNS KTGMQIKEAL NMQLEVQRRL HEQLEIQRKL QMRIEEQGEQ LKKMFDQQQK  360
TTRSLLETRN SSISSPVADS FDNTIFSSKI SYNDMATASI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-22232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-22232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-22232289158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-22232289158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-22232289158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-22232289158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-22232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-22232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-22232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-22232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-22232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-22232289259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483647.10.0PREDICTED: uncharacterized protein LOC107804295 isoform X1
TrEMBLA0A1S4B3Z70.0A0A1S4B3Z7_TOBAC; uncharacterized protein LOC107804295 isoform X1
STRINGXP_009623150.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-64G2-like family protein