PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483413.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 500aa    MW: 55136.8 Da    PI: 5.5802
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.26.1e-932124991290
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+++++++l   + l+++ + ++s +gdp+qRl ay++e+L ar   s++++y++l+++e +     + l+++++++e++P+lkf++
  XP_016483413.1 212 LKQLLIACARVLADNKLDDFEVLVTKARSTVSITGDPIQRLGAYIVEGLVARKELSGTTIYRSLRCKEPA---GNDLLSYMHILYEICPYLKFGY 303
                     689***************************************************9**************9...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea  +e+ vHiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  + + l ++++rL+ + e++++ +efn+ v     +
  XP_016483413.1 304 MAANGAIAEACRNENYVHIIDFQIAQGTQWMTLLQALAARPGGAPYVRITGIDDPVSQyaRGDGLAAVEKRLSAISEKFNIAVEFNA-VPVFAPE 397
                     *******************************************************999999**************************.6888899 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++  +L+v+pgEa+aVn+ lqlh+++desv+++++rde+++++ksl Pk+v++veqe+++n+++F+ rfleal+yy a+f+s++++l+r+ +eri
  XP_016483413.1 398 VTKAMLDVRPGEAVAVNFPLQLHHTPDESVDVNNPRDELIRMIKSLCPKIVTLVEQESNTNTAPFFPRFLEALDYYHAMFESIDVTLARDRKERI 492
                     99********************************************************************************************* PP

            GRAS 284 kvErell 290
                     +vE+++l
  XP_016483413.1 493 NVEQHCL 499
                     *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.175186500IPR005202Transcription factor GRAS
PfamPF035142.1E-90212499IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDAHHFYDYG VTGSDLSYSS YPTISSLPNR PSGTSKFDSE NSPISPLANY FDSETFTTLS  60
NCQEQHSSTE NLSGASSSSN SSLDYNNYFH RPSSSPDCLP EGLLVFSGGN AVLQNAVHSQ  120
NMQHALLQLE SALMGPDEEV TKSSPSYGGN RAAQTSNQRS RAWTNESKVL HQNETQRSQI  180
SLFAKSGNGI RSQEQNKVLD NLPLHGLPSS NLKQLLIACA RVLADNKLDD FEVLVTKARS  240
TVSITGDPIQ RLGAYIVEGL VARKELSGTT IYRSLRCKEP AGNDLLSYMH ILYEICPYLK  300
FGYMAANGAI AEACRNENYV HIIDFQIAQG TQWMTLLQAL AARPGGAPYV RITGIDDPVS  360
QYARGDGLAA VEKRLSAISE KFNIAVEFNA VPVFAPEVTK AMLDVRPGEA VAVNFPLQLH  420
HTPDESVDVN NPRDELIRMI KSLCPKIVTL VEQESNTNTA PFFPRFLEAL DYYHAMFESI  480
DVTLARDRKE RINVEQHCLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-492094961285GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7676600.0KJ767660.1 Nicotiana tabacum GRAS2 protein (GRAS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616343.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG11e-168CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1S4B3P40.0A0A1S4B3P4_TOBAC; chitin-inducible gibberellin-responsive protein 1-like
STRINGXP_009616343.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-131GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]