PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483077.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 297aa    MW: 32148.9 Da    PI: 4.7894
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483077.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.68.2e-06447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  XP_016483077.1  4 QCNVCEVAEANVLCCADEAALCWSCDEKVHAAnklaskHQRVPL 47
                    7*****999*********************66899999999986 PP
2zf-B_box28.23.8e-095390237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                    +++kC+ ++e    +fC +++ llC++C  ++H    H
  XP_016483077.1 53 SMPKCDICQESVGYFFCLEDRALLCRKCDIAIHTAnpH 90
                    689*******99********************955663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.594147IPR000315B-box-type zinc finger
CDDcd000214.68E-7347No hitNo description
SMARTSM003362.8E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1015299IPR000315B-box-type zinc finger
SMARTSM003367.7E-165299IPR000315B-box-type zinc finger
PfamPF006437.6E-75389IPR000315B-box-type zinc finger
CDDcd000218.45E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLSGS SSSMPKCDIC  60
QESVGYFFCL EDRALLCRKC DIAIHTANPH VSAHQRFLLT GVKVGLEPVD PGGASSSGTS  120
QSIQKVSEPE SASLSKRNAP ISLDAQFDKV LPPQASAVGE FAPSRSPFAG GSAAGSIPQW  180
QFDEYIGLND FNQNYGYMDD GSSRADNGKL GESDCSSILR FEDEELDGEE CLGQVPDTSW  240
AVPQVPSPPT ASGLYWPKTY QNPFDCSMFV PDVSYSPSHN LQQRPPNGTS LKRRRQC
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-150HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762543.10.0PREDICTED: probable salt tolerance-like protein At1g78600
RefseqXP_016483077.10.0PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM21e-100BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1S4B2C10.0A0A1S4B2C1_TOBAC; B-box zinc finger protein 22-like
TrEMBLA0A1U7V8430.0A0A1U7V843_NICSY; probable salt tolerance-like protein At1g78600
STRINGXP_009762543.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-98light-regulated zinc finger protein 1