PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483068.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 428aa    MW: 46913.3 Da    PI: 6.7317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20198247255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  XP_016483068.1 198 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 247
                     8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.33E-21197257No hitNo description
SMARTSM003806.3E-37198261IPR001471AP2/ERF domain
PfamPF008473.4E-14198247IPR001471AP2/ERF domain
PROSITE profilePS5103225.712198255IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-33198256IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22198256IPR016177DNA-binding domain
PRINTSPR003671.2E-11199210IPR001471AP2/ERF domain
PRINTSPR003671.2E-11221237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MCLLIKVANP GESGEHDRIP STGGDSESTT TTTTTTEGGI PQPYEQSFEE MLRQQIQQET  60
EYLMSSSATP MFSGYSQTRE MSAMVTALTH VVSGRRQGEL TYRPEITTSF GGGSPSSSSS  120
GSWAGQKRRR DQEESVAAEQ VQRVYGGFGE FRSGESSSSV KPEASSMVAP PTTTTAAAQP  180
TPQSAEGGAE ETGERRKRYR GVRQRPWGKW AAEIRDPHKA ARVWLGTFDT AEAAARAYDE  240
AALRFRGNRA KLNFPENVRL LPQQQQQYQP TTRSAISSSS AASQFPLMAA ATTPSPFFQT  300
YQPQQQQQQP PFQSSEMVRD YWEYSQLLQN PGDFHAQQSS SSLLEQMLFA SSSMGLLHSH  360
TFPSYSSSSS LATSSSASSP AYPLFYSAQQ SRFFQPPQTS HQNQTSSSTS SFPAPFWTSS  420
THYPPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22197258163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5384241e-103AJ538424.1 Nicotiana tabacum cDNA-AFLP-fragment BC1-M43-024.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777816.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
RefseqXP_016483068.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLA0A1S4B2Q40.0A0A1S4B2Q4_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLA0A1U7WKJ50.0A0A1U7WKJ5_NICSY; ethylene-responsive transcription factor ABR1-like isoform X1
STRINGXP_009777816.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-22ethylene response factor 110