PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016482956.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 29695.4 Da PI: 8.2943 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+ +v+++G ++W+ a+ g++Rt+k+c++rw +yl XP_016482956.1 8 KGPWSEQEDLQLAFYVNLFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 8.9e-16 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l+++++ ++G++ W++Ia +++ gRt++++k++w++++ XP_016482956.1 61 RGKMTPQEERLILELHSKWGNR-WSRIAWKLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.869 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-27 | 7 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-12 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-7 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.102 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-9 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAQEEARKGP WSEQEDLQLA FYVNLFGDRR WDFLAKVSGL KRTGKSCRLR WVNYLHPGLK 60 RGKMTPQEER LILELHSKWG NRWSRIAWKL PGRTDNEIKN YWRTHMRKKA QDDRKNKASI 120 SPSSSFSNCS SYFSSNSPDV DFMPITENNE RNFYDTGGLL GVHEQSSLQN AGKKKVGDQE 180 KGKSMKVYSM DEIWKDIELL SEENEKKNKP ILPISTMWEY CPDSTLWMTD EEETKMFPQF 240 YCLDNQDNSF FTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-26 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 7e-26 | 5 | 110 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597408.1 | 0.0 | PREDICTED: transcription factor MYB48-like | ||||
Refseq | XP_016482956.1 | 0.0 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q53NK6 | 6e-71 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A1S4B2A3 | 0.0 | A0A1S4B2A3_TOBAC; transcription factor MYB48-like | ||||
STRING | XP_009597408.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 3e-70 | myb domain protein 48 |
Publications ? help Back to Top | |||
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