PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482738.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 284aa    MW: 32427.9 Da    PI: 4.894
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.83.7e-22141356128
             NAM   6 rFh.PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                     rF+ P+d +l+++ L k v+gk l++e  i  +diy+ ePw+L   ++ ++k  yf ++ +kk++t+ r nr+t +g+W ++ k k++l++ ++ 
  XP_016482738.1  14 RFRpPSDTDLIMQ-LLKFVAGKCLPTEGLIGFADIYSNEPWQLIGDLS-SKKTHYFLTQLKKKKPTDARFNRTTGNGTWTQQNKGKQILDEdDSL 106
                     676369*****77.667899999999899**************86654.4678899999*******************************85566 PP

             NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                      +g k++L++   ++ ++ + +W+m ey l
  XP_016482738.1 107 IIGYKRSLTYK-HKKDSSLNGRWLMMEYFL 135
                     69*******98.5666669*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.5029159IPR003441NAC domain
PfamPF023651.0E-914134IPR003441NAC domain
SuperFamilySSF1019413.27E-2215158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MLQERTKPME KIARFRPPSD TDLIMQLLKF VAGKCLPTEG LIGFADIYSN EPWQLIGDLS  60
SKKTHYFLTQ LKKKKPTDAR FNRTTGNGTW TQQNKGKQIL DEDDSLIIGY KRSLTYKHKK  120
DSSLNGRWLM MEYFLAESLL QKLKSKEAKE FVICAIKKNP RSEIRGNSIA TIVEYKMFID  180
RVLQEGVLLQ TSGPSEQSTM ILSENSPVMV ESTSSDGGEF SMGQLVSKDG MLVIVNQTDS  240
DEFFGMVNVE NQERYYQEGD EEEVDWDSIL DFGDHGLVQN DLLY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7532650.0EU753265.1 Nicotiana tabacum NAC transcription factor (NAC8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482738.10.0PREDICTED: NAC transcription factor 56-like
TrEMBLA0A1S4B1S60.0A0A1S4B1S6_TOBAC; NAC transcription factor 56-like
STRINGXP_009623547.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9815725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-14NAC domain containing protein 52