PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482652.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 306aa    MW: 33616.8 Da    PI: 8.7588
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.6e-065880123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_016482652.1 58 FVCEICNKGFQRDQNLQLHRRGH 80
                    89*******************88 PP
2zf-C2H217.51.1e-05134156123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ C+k +  +s+ k H++t+
  XP_016482652.1 134 FKCERCTKKYAVQSDWKAHMKTC 156
                     89*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-75780No hitNo description
Gene3DG3DSA:3.30.160.608.9E-65780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.3E-55880IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495880IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035525099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.07E-7129155No hitNo description
SMARTSM0035563134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MADMENSSSM TVAGSSLEET ISQQNFPVKK KRNLPGNPDP EAEVIALSPK ALMATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRT SKEVKKRVYV CPEATCIHHD PSRALGDLTG  120
IKKHFCRKHG EKKFKCERCT KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS RRDSFVTHRA  180
FCDALAQESA RAQPMGITNT EENLKADEAV TSSSSPPPQP LTPSTGVLSP VLSIQSSELP  240
ADNQNQAGVQ LQAAQGNDAN VTSSNGFSAL LSSMDGGFGV ATSSYGGVAT RGQPWDDHSD  300
RKPSML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34130199372Zinc finger protein JACKDAW
5b3h_F1e-34130199372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482652.10.0PREDICTED: protein indeterminate-domain 2-like isoform X4
SwissprotQ9SCQ61e-113IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A1S4B1440.0A0A1S4B144_TOBAC; protein indeterminate-domain 2-like isoform X4
STRINGXP_009805007.11e-177(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-115indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]