PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016482481.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 306aa MW: 34238.8 Da PI: 8.1441 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.6 | 5.2e-32 | 75 | 131 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al C+AC+CHRnFHR+e e e XP_016482481.1 75 IVRYKECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALICSACNCHRNFHRKEIEGE 131 68**************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.4E-29 | 76 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-25 | 76 | 131 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.1E-31 | 77 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.506 | 78 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 226 | 295 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-18 | 227 | 294 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.6E-26 | 233 | 289 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MEIPSQEEEM PMPINSTYVG GGGGHGHGHI IHHDPTPVPN NTNHIIPSSV ANSINGPPIE 60 ATPVSADHHV PYKKIVRYKE CLKNHAAAMG GNATDGCGEF MPSGEEGTIE ALICSACNCH 120 RNFHRKEIEG EQQLLQLQPP PSSCDYYNLN RGGKKVYLGH SHNHHKSLLG PEQYGTIIPS 180 RATAPHHHQM IMSYNNMGSL PSESEEHEDI NGGGGVMAMA MARPLHHHNQ MVKKRFRTKF 240 TQEQKEKMFN FAEKVGWKIQ KQEETVVQQF CQELGIKRRV LKVWMHNNKH NLAKKNSNVT 300 IPQNQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-23 | 234 | 291 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 3e-55 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009762783.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_016482481.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_016482483.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
TrEMBL | A0A1S4B119 | 0.0 | A0A1S4B119_TOBAC; zinc-finger homeodomain protein 4-like | ||||
TrEMBL | A0A1U7V8S6 | 0.0 | A0A1U7V8S6_NICSY; zinc-finger homeodomain protein 4-like | ||||
STRING | XP_009762783.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5154 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 4e-73 | homeobox protein 31 |