PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482193.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 820aa    MW: 92896.4 Da    PI: 9.0929
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.1e-0892185147
                      TSSS-HHHHHHHHHHHHHTTTT...............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...............................................tWktIartmgkgRtlkqcksrwqky 47 
                      r+ W++eE e l+++vkq   +                                               +W+ +a++   gR++ +c+srw+++
   XP_016482193.1  92 RKEWSKEERENLAKGVKQQFQEmllqrsvdllsnkdgrsgesgdldgliasirdvvitpetmrlflpkvNWDQVAAMYIPGRSGAECQSRWLNW 185
                      789****************999*****************************************************99888************98 PP
2Myb_DNA-binding38.33.2e-12245289146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r  WT+eEd +l  av+ +G  +W ++a+ +  gR + qc +rw k
   XP_016482193.1 245 RREWTEEEDIKLCAAVETFGESNWQLVASVIE-GRAGTQCSNRWIK 289
                      678*****************************.***********87 PP
3Myb_DNA-binding414.4e-13299356246
                      SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                      g+W+++Ed++l+ av ++ ++               Wk+Ia++++ gRt  qc++rw +
   XP_016482193.1 299 GKWSADEDKRLKVAVMLFYPKswrnigqsvpcrapIWKKIAQYVP-GRTHVQCRERWVN 356
                      89*****************99************************.***********87 PP
4Myb_DNA-binding47.63.7e-15366408347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT+eEd++l+ a+ ++G   W+++a++++  Rt++qc+ rw  +
   XP_016482193.1 366 EWTEEEDLKLKSAIDEHGYS-WSKVAACVP-PRTDNQCRRRWKVL 408
                      7*****************99.*********.9**********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.94687186IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.2E-1090113IPR009057Homeodomain-like
SMARTSM007173.2E-691188IPR001005SANT/Myb domain
CDDcd001670.00845149185No hitNo description
Gene3DG3DSA:1.10.10.606.2E-10161195IPR009057Homeodomain-like
SuperFamilySSF466892.86E-13167240IPR009057Homeodomain-like
PROSITE profilePS500906.829187239IPR017877Myb-like domain
SMARTSM007170.16191241IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-9196247IPR009057Homeodomain-like
SuperFamilySSF466892.62E-17226297IPR009057Homeodomain-like
PROSITE profilePS5129418.611240295IPR017930Myb domain
SMARTSM007173.3E-11244293IPR001005SANT/Myb domain
CDDcd001675.11E-9247291No hitNo description
Gene3DG3DSA:1.10.10.602.8E-15248295IPR009057Homeodomain-like
PfamPF139211.3E-11248309No hitNo description
PROSITE profilePS500908.792293358IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.3E-14296348IPR009057Homeodomain-like
SMARTSM007179.2E-11297360IPR001005SANT/Myb domain
CDDcd001672.48E-7300358No hitNo description
SuperFamilySSF466895.19E-25338410IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-21349406IPR009057Homeodomain-like
PROSITE profilePS5129422.708359413IPR017930Myb domain
SMARTSM007172.7E-14363411IPR001005SANT/Myb domain
PfamPF002493.8E-14366407IPR001005SANT/Myb domain
CDDcd001671.01E-11366409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MMQIEARMEE LKKLKERVKI LKGFQIASRK RMGRALSQKR DARVQLISLP KQKCSSKLQG  60
KKLSAIHYGP PENSHVASVR EALTHFAVSL SRKEWSKEER ENLAKGVKQQ FQEMLLQRSV  120
DLLSNKDGRS GESGDLDGLI ASIRDVVITP ETMRLFLPKV NWDQVAAMYI PGRSGAECQS  180
RWLNWEDPLI KHEEWDILEE KALLHAVQRN EMSNWIDISA SLGVCRTPFQ CLSHYQRSLN  240
ASILRREWTE EEDIKLCAAV ETFGESNWQL VASVIEGRAG TQCSNRWIKS LHPTRKRCGK  300
WSADEDKRLK VAVMLFYPKS WRNIGQSVPC RAPIWKKIAQ YVPGRTHVQC RERWVNSLDP  360
SLKLDEWTEE EDLKLKSAID EHGYSWSKVA ACVPPRTDNQ CRRRWKVLFP DEVPMLQEAK  420
KIRREAFISN FVDREEERPA LKPNDIVPTH KLSYRAGCGT ASANKRRKLM PRATRDDSAP  480
RCDALCELER RHLEESEGPE SSDLLNNSSL SSRDQEIERI SDGEEAFEQG YHDSTKNKRP  540
SKLHPRRTKK LAPNDMVPEV SASSKVESTT AVNNICKNRR RTSSLVKKKR TIASQESSSS  600
LPNLSSSMTV VEEVDSHVQD SGKTMNIMDK RHSTSGYDDS CVNSEGPPLS RPHLDKGTAD  660
LDVGENRVWE NASTIGPQES SLYFQKNAVV CTDENARQLK ASGCHKLNKC NQLKSDGGFS  720
LNNLCETADD CMTLASFILK SRAKRRSLSS AKVAKLRPDI AQSKDVADDH SSRSCISGCH  780
DGVEKTMTQE CTSSNQIPRA EVADDMPLSL VMGRVKRRQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-261954059155MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-261954059155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-103HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482191.10.0PREDICTED: uncharacterized protein LOC107803091 isoform X1
TrEMBLA0A1S4B0420.0A0A1S4B042_TOBAC; uncharacterized protein LOC107803091 isoform X1
STRINGXP_009770188.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-146myb domain protein 4r1