PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482192.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 1056aa    MW: 118421 Da    PI: 6.7724
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07328421147
                      TSSS-HHHHHHHHHHHHHTTTT...............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...............................................tWktIartmgkgRtlkqcksrwqky 47 
                      r+ W++eE e l+++vkq   +                                               +W+ +a++   gR++ +c+srw+++
   XP_016482192.1 328 RKEWSKEERENLAKGVKQQFQEmllqrsvdllsnkdgrsgesgdldgliasirdvvitpetmrlflpkvNWDQVAAMYIPGRSGAECQSRWLNW 421
                      789****************999*****************************************************99888************98 PP

2Myb_DNA-binding37.84.3e-12481525146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r  WT+eEd +l  av+ +G  +W ++a+ +  gR + qc +rw k
   XP_016482192.1 481 RREWTEEEDIKLCAAVETFGESNWQLVASVIE-GRAGTQCSNRWIK 525
                      678*****************************.***********87 PP

3Myb_DNA-binding40.66.1e-13535592246
                      SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                      g+W+++Ed++l+ av ++ ++               Wk+Ia++++ gRt  qc++rw +
   XP_016482192.1 535 GKWSADEDKRLKVAVMLFYPKswrnigqsvpcrapIWKKIAQYVP-GRTHVQCRERWVN 592
                      89*****************99************************.***********87 PP

4Myb_DNA-binding47.25e-15602644347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT+eEd++l+ a+ ++G   W+++a++++  Rt++qc+ rw  +
   XP_016482192.1 602 EWTEEEDLKLKSAIDEHGYS-WSKVAACVP-PRTDNQCRRRWKVL 644
                      7*****************99.*********.9**********865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.946323422IPR017877Myb-like domain
SMARTSM007173.2E-6327424IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-6328361IPR009057Homeodomain-like
CDDcd001670.00477385421No hitNo description
Gene3DG3DSA:1.10.10.601.1E-5397443IPR009057Homeodomain-like
SuperFamilySSF466891.61E-12403472IPR009057Homeodomain-like
PROSITE profilePS500906.829423475IPR017877Myb-like domain
SMARTSM007170.16427477IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-8444481IPR009057Homeodomain-like
SuperFamilySSF466891.59E-17461533IPR009057Homeodomain-like
PROSITE profilePS5129418.611476531IPR017930Myb domain
SMARTSM007173.3E-11480529IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-15482531IPR009057Homeodomain-like
CDDcd001672.53E-9483527No hitNo description
PfamPF139211.8E-11484545No hitNo description
PROSITE profilePS500908.792529594IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-13532584IPR009057Homeodomain-like
SMARTSM007179.2E-11533596IPR001005SANT/Myb domain
CDDcd001671.12E-7536594No hitNo description
SuperFamilySSF466897.19E-25574646IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-21585642IPR009057Homeodomain-like
PROSITE profilePS5129422.708595649IPR017930Myb domain
SMARTSM007172.7E-14599647IPR001005SANT/Myb domain
CDDcd001674.10E-12602645No hitNo description
PfamPF002495.1E-14602643IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1056 aa     Download sequence    Send to blast
MAFDDDEDFS GSDSDDGFQE DMEALKKACL LSGKETDDLQ PSCSTGDIGG GHVIGADDVT  60
PSGTDVDDVD DDIELVRSIQ ERFALSTELR EPLTLEPLCS LPPPGSEGDD DFETLRAIQR  120
RFAAYDDDSG KGRKESPLNN FEQVGVTNIT SEKESSNNFF VERTNAGEGF PACVDGTTQI  180
SDGCSNEIAS SQNLIEWHDS GAENTAVSVN SFCFPKSAQA FVEAIKKNRS CQKIIRDKMM  240
QIEARMEELK KLKERVKILK GFQIASRKRM GRALSQKRDA RVQLISLPKQ KCSSKGKKLS  300
AIHYGPPENS HVASVREALT HFAVSLSRKE WSKEERENLA KGVKQQFQEM LLQRSVDLLS  360
NKDGRSGESG DLDGLIASIR DVVITPETMR LFLPKVNWDQ VAAMYIPGRS GAECQSRWLN  420
WEDPLIKHEE WDILEEKALL HAVQRNEMSN WIDISASLGV CRTPFQCLSH YQRSLNASIL  480
RREWTEEEDI KLCAAVETFG ESNWQLVASV IEGRAGTQCS NRWIKSLHPT RKRCGKWSAD  540
EDKRLKVAVM LFYPKSWRNI GQSVPCRAPI WKKIAQYVPG RTHVQCRERW VNSLDPSLKL  600
DEWTEEEDLK LKSAIDEHGY SWSKVAACVP PRTDNQCRRR WKVLFPDEVP MLQEAKKIRR  660
EAFISNFVDR EEERPALKPN DIVPTHKLSY RAGCGTASAN KRRKLMPRAT RDDSAPRCDA  720
LCELERRHLE ESEGPESSDL LNNSSLSSRD QEIERISDGE EAFEQGYHDS TKNKRPSKLH  780
PRRTKKLAPN DMVPEVSASS KVESTTAVNN ICKNRRRTSS LVKKKRTIAS QESSSSLPNL  840
SSSMTVVEEV DSHVQDSGKT MNIMDKRHST SGYDDSCVNS EGPPLSRPHL DKGTADLDVG  900
ENRVWENAST IGPQESSLYF QKNAVVCTDE NARQLKASGC HKLNKCNQLK SDGGFSLNNL  960
CETADDCMTL ASFILKSRAK RRSLSSAKVA KLRPDIAQSK DVADDHSSRS CISGCHDGVE  1020
KTMTQECTSS NQIPRAEVAD DMPLSLVMGR VKRRQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-254316419155MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-254316419155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-103HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482192.10.0PREDICTED: uncharacterized protein LOC107803091 isoform X2
TrEMBLA0A1S4AZS60.0A0A1S4AZS6_TOBAC; uncharacterized protein LOC107803091 isoform X2
STRINGXP_009770188.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-165myb domain protein 4r1